Calcium in PDB 1f8z: uc(Nmr) Structure of the Sixth Ligand-Binding Module of the Ldl Receptor

The binding sites of Calcium atom in the uc(Nmr) Structure of the Sixth Ligand-Binding Module of the Ldl Receptor (pdb code 1f8z). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the uc(Nmr) Structure of the Sixth Ligand-Binding Module of the Ldl Receptor, PDB code: 1f8z:

Calcium binding site 1 out of 1 in the uc(Nmr) Structure of the Sixth Ligand-Binding Module of the Ldl Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of uc(Nmr) Structure of the Sixth Ligand-Binding Module of the Ldl Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca40 b:0.0 occ:1.00 HB2 A:GLU25 2.5 0.0 1.0 H A:GLU25 2.5 0.0 1.0 OE2 A:GLU34 2.6 0.0 1.0 OD2 A:ASP33 2.6 0.0 1.0 OD2 A:ASP27 2.6 0.0 1.0 OD1 A:ASP23 2.6 0.0 1.0 O A:ARG20 2.8 0.0 1.0 H A:ASP27 2.8 0.0 1.0 C A:GLU25 2.9 0.0 1.0 HG2 A:GLU34 3.0 0.0 1.0 N A:GLU25 3.0 0.0 1.0 CG A:ASP27 3.2 0.0 1.0 O A:GLU25 3.2 0.0 1.0 CA A:GLU25 3.2 0.0 1.0 N A:TYR26 3.2 0.0 1.0 CB A:GLU25 3.3 0.0 1.0 CD A:GLU34 3.4 0.0 1.0 H A:TYR26 3.5 0.0 1.0 CG A:GLU34 3.5 0.0 1.0 OD1 A:ASP27 3.6 0.0 1.0 N A:ASP27 3.6 0.0 1.0 HG3 A:GLU34 3.6 0.0 1.0 HA A:TYR26 3.7 0.0 1.0 CG A:ASP23 3.8 0.0 1.0 CG A:ASP33 3.8 0.0 1.0 CA A:TYR26 4.0 0.0 1.0 HB3 A:GLU25 4.0 0.0 1.0 C A:ARG20 4.0 0.0 1.0 HB2 A:ASP27 4.1 0.0 1.0 C A:ARG24 4.1 0.0 1.0 CB A:ASP27 4.1 0.0 1.0 HD3 A:ARG20 4.2 0.0 1.0 H A:ASP23 4.2 0.0 1.0 HA A:GLN21 4.2 0.0 1.0 OE1 A:GLU25 4.2 0.0 1.0 C A:TYR26 4.2 0.0 1.0 HD13 A:ILE16 4.2 0.0 1.0 HA A:GLU25 4.3 0.0 1.0 H A:ARG24 4.3 0.0 1.0 N A:ARG24 4.4 0.0 1.0 CG A:GLU25 4.4 0.0 1.0 HA A:ARG24 4.4 0.0 1.0 HG3 A:GLU25 4.4 0.0 1.0 HB3 A:ARG20 4.4 0.0 1.0 OD2 A:ASP23 4.4 0.0 1.0 OD1 A:ASP33 4.5 0.0 1.0 OE1 A:GLU34 4.5 0.0 1.0 CA A:ASP27 4.5 0.0 1.0 CA A:ARG24 4.5 0.0 1.0 HB2 A:ASP33 4.7 0.0 1.0 H A:CYS22 4.7 0.0 1.0 O A:ASP33 4.7 0.0 1.0 HA A:ARG20 4.8 0.0 1.0 CD A:GLU25 4.8 0.0 1.0 C A:ASP23 4.8 0.0 1.0 HA A:ASP27 4.9 0.0 1.0 CA A:ARG20 4.9 0.0 1.0 CB A:ASP33 4.9 0.0 1.0 N A:ASP23 4.9 0.0 1.0 N A:GLN21 4.9 0.0 1.0 CB A:ASP23 5.0 0.0 1.0 HG22 A:ILE16 5.0 0.0 1.0 CA A:GLN21 5.0 0.0 1.0

D.Clayton, I.M.Brereton, P.A.Kroon, R.Smith. Three-Dimensional uc(Nmr) Structure of the Sixth Ligand-Binding Module of the Human Ldl Receptor: Comparison of Two Adjacent Modules with Different Ligand Binding Specificities. Febs Lett. V. 479 118 2000.
ISSN: ISSN 0014-5793
PubMed: 10981718
DOI: 10.1016/S0014-5793(00)01842-1