Atomistry » Calcium » PDB 1fak-1fn6 » 1fbl
Atomistry »
  Calcium »
    PDB 1fak-1fn6 »
      1fbl »

Calcium in PDB 1fbl: Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller

Enzymatic activity of Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller

All present enzymatic activity of Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller:
3.4.24.7;

Protein crystallography data

The structure of Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller, PDB code: 1fbl was solved by J.Li, P.Brick, D.M.Blow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.00 / 2.50
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 161.140, 161.140, 52.220, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / n/a

Other elements in 1fbl:

The structure of Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller (pdb code 1fbl). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller, PDB code: 1fbl:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 1fbl

Go back to Calcium Binding Sites List in 1fbl
Calcium binding site 1 out of 4 in the Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca993

b:22.5
occ:1.00
 O A:GLU199 2.2 20.8 1.0
OE2 A:GLU199 2.2 22.1 1.0
OD2 A:ASP124 2.4 24.5 1.0
O A:GLU201 2.6 22.1 1.0
CG A:ASP124 3.1 24.4 1.0
OD1 A:ASP124 3.2 24.3 1.0
CD A:GLU199 3.3 21.6 1.0
C A:GLU199 3.3 20.9 1.0
C A:GLU201 3.7 21.9 1.0
CG A:GLU199 3.8 21.2 1.0
CA A:GLU199 4.1 20.8 1.0
OG1 A:THR122 4.1 24.0 1.0
CD1 A:TRP203 4.3 19.4 1.0
N A:GLU201 4.4 21.8 1.0
N A:ASP200 4.4 21.2 1.0
OE1 A:GLU199 4.4 21.6 1.0
CB A:GLU199 4.5 20.9 1.0
N A:ARG202 4.5 22.0 1.0
CA A:ARG202 4.5 22.1 1.0
C A:ASP200 4.5 21.7 1.0
CB A:ASP124 4.6 24.7 1.0
CA A:GLU201 4.7 21.8 1.0
CA A:ASP200 4.7 21.5 1.0
N A:TRP203 4.7 21.8 1.0
NE1 A:TRP203 4.8 19.2 1.0
O A:HOH516 4.9 18.5 1.0

Calcium binding site 2 out of 4 in 1fbl

Go back to Calcium Binding Sites List in 1fbl
Calcium binding site 2 out of 4 in the Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca994

b:31.9
occ:1.00
 O A:ASP378 2.2 39.7 1.0
O A:GLN329 2.4 29.9 1.0
O A:ASP285 2.5 27.8 1.0
O A:ASP427 2.5 33.0 1.0
C A:ASP378 3.3 39.8 1.0
C A:GLN329 3.6 29.9 1.0
C A:ASP427 3.6 32.9 1.0
C A:ASP285 3.7 27.6 1.0
CA A:ASP378 3.8 40.1 1.0
CA A:GLN329 4.2 30.0 1.0
CA A:ASP427 4.2 33.5 1.0
N A:ALA379 4.4 39.2 1.0
CB A:ASP378 4.4 39.8 1.0
CA A:ASP285 4.5 27.7 1.0
O A:VAL426 4.6 35.5 1.0
N A:ALA330 4.7 30.1 1.0
N A:ALA286 4.7 27.2 1.0
N A:ALA428 4.8 32.1 1.0
CB A:GLN329 4.8 30.3 1.0
O A:ILE377 4.8 42.1 1.0
CA A:ALA379 4.8 38.8 1.0
CA A:ALA286 4.9 26.9 1.0
CA A:ALA330 5.0 30.4 1.0

Calcium binding site 3 out of 4 in 1fbl

Go back to Calcium Binding Sites List in 1fbl
Calcium binding site 3 out of 4 in the Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca995

b:38.8
occ:1.00
 O A:HOH834 1.3 61.4 1.0
O A:GLY190 2.3 27.3 1.0
O A:GLY192 2.4 24.4 1.0
O A:ASP158 2.5 26.5 1.0
O A:HOH837 2.9 58.4 1.0
OD1 A:ASP194 3.1 22.3 1.0
C A:GLY190 3.5 27.4 1.0
C A:ASP158 3.6 26.3 1.0
C A:GLY192 3.6 24.5 1.0
CG A:ASP194 3.8 22.1 1.0
C A:ILE191 4.0 26.5 1.0
OD2 A:ASP194 4.0 22.0 1.0
N A:GLY192 4.0 25.8 1.0
O A:ALA157 4.1 27.7 1.0
O A:ILE191 4.1 26.5 1.0
O A:GLY188 4.2 28.2 1.0
CA A:ASP158 4.2 26.8 1.0
N A:ILE191 4.3 27.1 1.0
CA A:ILE191 4.3 26.7 1.0
N A:GLY190 4.4 28.3 1.0
CA A:GLY192 4.4 25.0 1.0
CA A:GLY190 4.4 27.7 1.0
O A:HOH659 4.5 39.2 1.0
C A:PRO189 4.6 28.6 1.0
N A:ASP194 4.6 22.8 1.0
N A:ILE159 4.7 25.4 1.0
N A:GLY193 4.7 24.0 1.0
CH2 A:TRP109 4.7 39.0 1.0
O A:HOH594 4.8 35.8 1.0
CG A:MET160 4.9 22.0 1.0
CA A:GLY193 4.9 23.3 1.0
O A:PRO189 4.9 28.7 1.0
CB A:ASP194 4.9 22.3 1.0
CA A:ILE159 5.0 24.4 1.0
C A:GLY193 5.0 23.0 1.0
CZ2 A:TRP109 5.0 38.9 1.0

Calcium binding site 4 out of 4 in 1fbl

Go back to Calcium Binding Sites List in 1fbl
Calcium binding site 4 out of 4 in the Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Full-Length Porcine Synovial Collagenase (MMP1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca996

b:14.4
occ:1.00
 O A:ASN180 2.0 21.1 1.0
O A:GLY176 2.2 25.4 1.0
O A:GLY178 2.2 22.1 1.0
OE2 A:GLU201 2.3 22.1 1.0
OD2 A:ASP198 2.3 19.9 1.0
OD1 A:ASP175 2.4 26.4 1.0
C A:ASN180 3.2 21.2 1.0
C A:GLY178 3.4 22.2 1.0
C A:GLY176 3.4 25.1 1.0
CD A:GLU201 3.5 21.9 1.0
CG A:ASP198 3.5 19.9 1.0
CG A:ASP175 3.5 26.7 1.0
N A:GLY178 3.8 23.6 1.0
N A:ASN180 3.9 21.7 1.0
C A:PRO177 4.0 24.0 1.0
CA A:ASN180 4.0 21.3 1.0
OD2 A:ASP175 4.1 26.4 1.0
N A:GLY176 4.1 25.9 1.0
CA A:GLY178 4.1 22.7 1.0
CB A:ASP198 4.1 20.0 1.0
N A:LEU181 4.2 21.1 1.0
C A:GLY179 4.3 21.7 1.0
CG A:GLU201 4.3 21.5 1.0
N A:PRO177 4.3 24.6 1.0
CB A:ASN180 4.3 21.2 1.0
OE1 A:GLU201 4.3 21.8 1.0
CA A:GLY176 4.4 25.4 1.0
CA A:PRO177 4.4 24.2 1.0
C A:ASP175 4.4 26.5 1.0
N A:GLY179 4.5 21.8 1.0
N A:ASP175 4.5 27.6 1.0
O A:PRO177 4.5 24.1 1.0
OD1 A:ASP198 4.5 19.6 1.0
CA A:LEU181 4.5 20.7 1.0
O A:GLY179 4.7 21.8 1.0
CB A:ASP175 4.7 26.9 1.0
CA A:GLY179 4.7 21.6 1.0
CA A:ASP175 4.7 26.9 1.0
O A:ASP175 5.0 26.3 1.0

Reference:

J.Li, P.Brick, M.C.O'hare, T.Skarzynski, L.F.Lloyd, V.A.Curry, I.M.Clark, H.F.Bigg, B.L.Hazleman, T.E.Cawston, D.M.Blow. Structure of Full-Length Porcine Synovial Collagenase Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta-Propeller. Structure V. 3 541 1995.
ISSN: ISSN 0969-2126
PubMed: 8590015
DOI: 10.1016/S0969-2126(01)00188-5
Page generated: Sat Dec 12 02:55:23 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy