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Calcium in PDB 1fpw: Structure of Yeast Frequenin

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Yeast Frequenin (pdb code 1fpw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of Yeast Frequenin, PDB code: 1fpw:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 1fpw

Go back to Calcium Binding Sites List in 1fpw
Calcium binding site 1 out of 3 in the Structure of Yeast Frequenin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Yeast Frequenin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca500

b:0.0
occ:1.00
NE2 A:HIS81 1.6 0.0 1.0
CD2 A:HIS81 2.2 0.0 1.0
HD2 A:HIS81 2.2 0.0 1.0
OD1 A:ASP73 2.5 0.0 1.0
HD22 A:ASN77 2.5 0.0 1.0
OD2 A:ASP75 2.6 0.0 1.0
OE1 A:GLU84 2.6 0.0 1.0
O A:PHE79 2.6 0.0 1.0
OD1 A:ASN77 2.6 0.0 1.0
OD1 A:ASP75 2.6 0.0 1.0
OE2 A:GLU84 2.6 0.0 1.0
CD A:GLU84 2.8 0.0 1.0
CG A:ASP75 2.8 0.0 1.0
CE1 A:HIS81 2.9 0.0 1.0
HA A:ILE80 3.1 0.0 1.0
ND2 A:ASN77 3.2 0.0 1.0
CG A:ASN77 3.3 0.0 1.0
H A:HIS81 3.3 0.0 1.0
CG A:HIS81 3.5 0.0 1.0
HE1 A:HIS81 3.5 0.0 1.0
H A:ASP75 3.5 0.0 1.0
H A:LYS74 3.5 0.0 1.0
CG A:ASP73 3.6 0.0 1.0
ND1 A:HIS81 3.7 0.0 1.0
C A:PHE79 3.8 0.0 1.0
HA A:ASP73 3.8 0.0 1.0
N A:HIS81 4.0 0.0 1.0
CA A:ILE80 4.1 0.0 1.0
HD21 A:ASN77 4.1 0.0 1.0
CG A:GLU84 4.2 0.0 1.0
H A:PHE79 4.3 0.0 1.0
H A:ASN77 4.3 0.0 1.0
HB2 A:GLU84 4.4 0.0 1.0
CB A:ASP75 4.4 0.0 1.0
OD2 A:ASP73 4.4 0.0 1.0
N A:ILE80 4.4 0.0 1.0
N A:ASP75 4.5 0.0 1.0
N A:LYS74 4.5 0.0 1.0
HB3 A:GLU84 4.5 0.0 1.0
C A:ILE80 4.5 0.0 1.0
CA A:ASP73 4.6 0.0 1.0
CB A:GLU84 4.6 0.0 1.0
CB A:ASP73 4.6 0.0 1.0
HG3 A:GLU84 4.6 0.0 1.0
HD1 A:HIS81 4.7 0.0 1.0
CB A:ASN77 4.7 0.0 1.0
HB3 A:ASP75 4.8 0.0 1.0
CB A:HIS81 4.8 0.0 1.0
HB3 A:ASP73 4.8 0.0 1.0
HG22 A:ILE80 4.9 0.0 1.0
CA A:PHE79 4.9 0.0 1.0
HB2 A:PHE79 4.9 0.0 1.0
N A:PHE79 4.9 0.0 1.0
HG2 A:GLU84 4.9 0.0 1.0
HB2 A:ASP75 4.9 0.0 1.0
CA A:ASP75 5.0 0.0 1.0
HB3 A:ASN77 5.0 0.0 1.0
HG12 A:ILE80 5.0 0.0 1.0

Calcium binding site 2 out of 3 in 1fpw

Go back to Calcium Binding Sites List in 1fpw
Calcium binding site 2 out of 3 in the Structure of Yeast Frequenin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Yeast Frequenin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:0.0
occ:1.00
O A:TYR115 1.7 0.0 1.0
HA A:ILE116 2.1 0.0 1.0
OE2 A:GLU120 2.5 0.0 1.0
HG1 A:THR117 2.6 0.0 1.0
C A:TYR115 2.6 0.0 1.0
OE1 A:GLU120 2.6 0.0 1.0
C A:ILE116 2.6 0.0 1.0
CA A:ILE116 2.6 0.0 1.0
OD1 A:ASP109 2.6 0.0 1.0
OG1 A:THR117 2.7 0.0 1.0
OD1 A:ASN111 2.8 0.0 1.0
OD1 A:ASP113 2.8 0.0 1.0
CD A:GLU120 2.8 0.0 1.0
N A:ILE116 3.0 0.0 1.0
N A:THR117 3.0 0.0 1.0
O A:ILE116 3.1 0.0 1.0
H A:THR117 3.1 0.0 1.0
OD2 A:ASP113 3.3 0.0 1.0
CG A:ASP113 3.4 0.0 1.0
HD22 A:ASN111 3.5 0.0 1.0
CB A:THR117 3.7 0.0 1.0
CG A:ASN111 3.8 0.0 1.0
CG A:ASP109 3.8 0.0 1.0
HB3 A:TYR115 3.9 0.0 1.0
CA A:TYR115 3.9 0.0 1.0
CA A:THR117 3.9 0.0 1.0
H A:ILE116 3.9 0.0 1.0
HB A:THR117 3.9 0.0 1.0
ND2 A:ASN111 4.0 0.0 1.0
HA A:ASP109 4.0 0.0 1.0
HB3 A:TYR163 4.1 0.0 1.0
H A:TYR115 4.1 0.0 1.0
CB A:ILE116 4.1 0.0 1.0
HB2 A:TYR115 4.2 0.0 1.0
CB A:TYR115 4.2 0.0 1.0
HA A:THR117 4.3 0.0 1.0
CG A:GLU120 4.4 0.0 1.0
OD2 A:ASP109 4.4 0.0 1.0
N A:TYR115 4.4 0.0 1.0
HG13 A:ILE116 4.4 0.0 1.0
HG22 A:ILE116 4.4 0.0 1.0
HG12 A:ILE116 4.6 0.0 1.0
H A:ASN111 4.6 0.0 1.0
H A:ASP113 4.6 0.0 1.0
CG1 A:ILE116 4.7 0.0 1.0
HA A:TYR115 4.7 0.0 1.0
HB2 A:GLU120 4.7 0.0 1.0
CG2 A:ILE116 4.8 0.0 1.0
HB A:ILE116 4.8 0.0 1.0
HG2 A:GLU120 4.8 0.0 1.0
HG3 A:GLU120 4.8 0.0 1.0
CA A:ASP109 4.9 0.0 1.0
HD2 A:TYR163 4.9 0.0 1.0
CB A:ASP109 4.9 0.0 1.0
HG23 A:ILE116 4.9 0.0 1.0
CB A:ASP113 4.9 0.0 1.0
HD21 A:ASN111 5.0 0.0 1.0
CG2 A:THR117 5.0 0.0 1.0

Calcium binding site 3 out of 3 in 1fpw

Go back to Calcium Binding Sites List in 1fpw
Calcium binding site 3 out of 3 in the Structure of Yeast Frequenin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Yeast Frequenin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:0.0
occ:1.00
HA A:ILE164 2.0 0.0 1.0
OE1 A:GLU168 2.4 0.0 1.0
OD2 A:ASP161 2.5 0.0 1.0
OD1 A:ASP157 2.5 0.0 1.0
O A:TYR163 2.5 0.0 1.0
OD1 A:ASN159 2.5 0.0 1.0
OE2 A:GLU168 2.6 0.0 1.0
CG A:ASP161 2.7 0.0 1.0
OD1 A:ASP161 2.7 0.0 1.0
CD A:GLU168 2.8 0.0 1.0
HG13 A:ILE164 2.8 0.0 1.0
CA A:ILE164 3.0 0.0 1.0
HB A:ILE164 3.2 0.0 1.0
H A:THR165 3.3 0.0 1.0
C A:TYR163 3.4 0.0 1.0
CB A:ILE164 3.4 0.0 1.0
CG A:ASN159 3.6 0.0 1.0
CG1 A:ILE164 3.6 0.0 1.0
N A:ILE164 3.6 0.0 1.0
CG A:ASP157 3.7 0.0 1.0
HE1 A:TYR115 3.7 0.0 1.0
HD22 A:ASN159 3.8 0.0 1.0
HG1 A:THR165 3.8 0.0 1.0
HA A:ASP157 3.8 0.0 1.0
HB2 A:ASP161 3.9 0.0 1.0
CB A:ASP161 3.9 0.0 1.0
N A:THR165 4.0 0.0 1.0
C A:ILE164 4.0 0.0 1.0
ND2 A:ASN159 4.1 0.0 1.0
HG12 A:ILE164 4.2 0.0 1.0
CG A:GLU168 4.2 0.0 1.0
HD1 A:TYR115 4.3 0.0 1.0
OD2 A:ASP157 4.4 0.0 1.0
HB2 A:GLU168 4.5 0.0 1.0
HB3 A:ASP161 4.5 0.0 1.0
HB2 A:ASN159 4.6 0.0 1.0
OG1 A:THR165 4.6 0.0 1.0
H A:ILE164 4.6 0.0 1.0
CE1 A:TYR115 4.6 0.0 1.0
HD13 A:ILE164 4.6 0.0 1.0
HG3 A:GLU168 4.7 0.0 1.0
HB3 A:GLU168 4.7 0.0 1.0
CA A:ASP157 4.7 0.0 1.0
CB A:ASP157 4.7 0.0 1.0
CB A:ASN159 4.7 0.0 1.0
CD1 A:ILE164 4.7 0.0 1.0
CB A:GLU168 4.8 0.0 1.0
CA A:TYR163 4.8 0.0 1.0
HG2 A:GLU168 4.9 0.0 1.0
H A:TYR163 4.9 0.0 1.0
CD1 A:TYR115 4.9 0.0 1.0
HB2 A:ASP157 4.9 0.0 1.0
CG2 A:ILE164 4.9 0.0 1.0
H A:ASP161 4.9 0.0 1.0
N A:ASP161 5.0 0.0 1.0
CA A:ASP161 5.0 0.0 1.0

Reference:

J.B.Ames, K.B.Hendricks, T.Strahl, I.G.Huttner, N.Hamasaki, J.Thorner. Structure and Calcium-Binding Properties of FRQ1, A Novel Calcium Sensor in the Yeast Saccharomyces Cerevisiae. Biochemistry V. 39 12149 2000.
ISSN: ISSN 0006-2960
PubMed: 11015193
DOI: 10.1021/BI0012890
Page generated: Thu Jul 11 08:17:13 2024

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