Calcium in PDB 1fpw: Structure of Yeast Frequenin

The binding sites of Calcium atom in the Structure of Yeast Frequenin (pdb code 1fpw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of Yeast Frequenin, PDB code: 1fpw:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Structure of Yeast Frequenin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Yeast Frequenin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca500 b:0.0 occ:1.00 NE2 A:HIS81 1.6 0.0 1.0 CD2 A:HIS81 2.2 0.0 1.0 HD2 A:HIS81 2.2 0.0 1.0 OD1 A:ASP73 2.5 0.0 1.0 HD22 A:ASN77 2.5 0.0 1.0 OD2 A:ASP75 2.6 0.0 1.0 OE1 A:GLU84 2.6 0.0 1.0 O A:PHE79 2.6 0.0 1.0 OD1 A:ASN77 2.6 0.0 1.0 OD1 A:ASP75 2.6 0.0 1.0 OE2 A:GLU84 2.6 0.0 1.0 CD A:GLU84 2.8 0.0 1.0 CG A:ASP75 2.8 0.0 1.0 CE1 A:HIS81 2.9 0.0 1.0 HA A:ILE80 3.1 0.0 1.0 ND2 A:ASN77 3.2 0.0 1.0 CG A:ASN77 3.3 0.0 1.0 H A:HIS81 3.3 0.0 1.0 CG A:HIS81 3.5 0.0 1.0 HE1 A:HIS81 3.5 0.0 1.0 H A:ASP75 3.5 0.0 1.0 H A:LYS74 3.5 0.0 1.0 CG A:ASP73 3.6 0.0 1.0 ND1 A:HIS81 3.7 0.0 1.0 C A:PHE79 3.8 0.0 1.0 HA A:ASP73 3.8 0.0 1.0 N A:HIS81 4.0 0.0 1.0 CA A:ILE80 4.1 0.0 1.0 HD21 A:ASN77 4.1 0.0 1.0 CG A:GLU84 4.2 0.0 1.0 H A:PHE79 4.3 0.0 1.0 H A:ASN77 4.3 0.0 1.0 HB2 A:GLU84 4.4 0.0 1.0 CB A:ASP75 4.4 0.0 1.0 OD2 A:ASP73 4.4 0.0 1.0 N A:ILE80 4.4 0.0 1.0 N A:ASP75 4.5 0.0 1.0 N A:LYS74 4.5 0.0 1.0 HB3 A:GLU84 4.5 0.0 1.0 C A:ILE80 4.5 0.0 1.0 CA A:ASP73 4.6 0.0 1.0 CB A:GLU84 4.6 0.0 1.0 CB A:ASP73 4.6 0.0 1.0 HG3 A:GLU84 4.6 0.0 1.0 HD1 A:HIS81 4.7 0.0 1.0 CB A:ASN77 4.7 0.0 1.0 HB3 A:ASP75 4.8 0.0 1.0 CB A:HIS81 4.8 0.0 1.0 HB3 A:ASP73 4.8 0.0 1.0 HG22 A:ILE80 4.9 0.0 1.0 CA A:PHE79 4.9 0.0 1.0 HB2 A:PHE79 4.9 0.0 1.0 N A:PHE79 4.9 0.0 1.0 HG2 A:GLU84 4.9 0.0 1.0 HB2 A:ASP75 4.9 0.0 1.0 CA A:ASP75 5.0 0.0 1.0 HB3 A:ASN77 5.0 0.0 1.0 HG12 A:ILE80 5.0 0.0 1.0

Calcium binding site 2 out of 3 in the Structure of Yeast Frequenin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Yeast Frequenin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:0.0 occ:1.00 O A:TYR115 1.7 0.0 1.0 HA A:ILE116 2.1 0.0 1.0 OE2 A:GLU120 2.5 0.0 1.0 HG1 A:THR117 2.6 0.0 1.0 C A:TYR115 2.6 0.0 1.0 OE1 A:GLU120 2.6 0.0 1.0 C A:ILE116 2.6 0.0 1.0 CA A:ILE116 2.6 0.0 1.0 OD1 A:ASP109 2.6 0.0 1.0 OG1 A:THR117 2.7 0.0 1.0 OD1 A:ASN111 2.8 0.0 1.0 OD1 A:ASP113 2.8 0.0 1.0 CD A:GLU120 2.8 0.0 1.0 N A:ILE116 3.0 0.0 1.0 N A:THR117 3.0 0.0 1.0 O A:ILE116 3.1 0.0 1.0 H A:THR117 3.1 0.0 1.0 OD2 A:ASP113 3.3 0.0 1.0 CG A:ASP113 3.4 0.0 1.0 HD22 A:ASN111 3.5 0.0 1.0 CB A:THR117 3.7 0.0 1.0 CG A:ASN111 3.8 0.0 1.0 CG A:ASP109 3.8 0.0 1.0 HB3 A:TYR115 3.9 0.0 1.0 CA A:TYR115 3.9 0.0 1.0 CA A:THR117 3.9 0.0 1.0 H A:ILE116 3.9 0.0 1.0 HB A:THR117 3.9 0.0 1.0 ND2 A:ASN111 4.0 0.0 1.0 HA A:ASP109 4.0 0.0 1.0 HB3 A:TYR163 4.1 0.0 1.0 H A:TYR115 4.1 0.0 1.0 CB A:ILE116 4.1 0.0 1.0 HB2 A:TYR115 4.2 0.0 1.0 CB A:TYR115 4.2 0.0 1.0 HA A:THR117 4.3 0.0 1.0 CG A:GLU120 4.4 0.0 1.0 OD2 A:ASP109 4.4 0.0 1.0 N A:TYR115 4.4 0.0 1.0 HG13 A:ILE116 4.4 0.0 1.0 HG22 A:ILE116 4.4 0.0 1.0 HG12 A:ILE116 4.6 0.0 1.0 H A:ASN111 4.6 0.0 1.0 H A:ASP113 4.6 0.0 1.0 CG1 A:ILE116 4.7 0.0 1.0 HA A:TYR115 4.7 0.0 1.0 HB2 A:GLU120 4.7 0.0 1.0 CG2 A:ILE116 4.8 0.0 1.0 HB A:ILE116 4.8 0.0 1.0 HG2 A:GLU120 4.8 0.0 1.0 HG3 A:GLU120 4.8 0.0 1.0 CA A:ASP109 4.9 0.0 1.0 HD2 A:TYR163 4.9 0.0 1.0 CB A:ASP109 4.9 0.0 1.0 HG23 A:ILE116 4.9 0.0 1.0 CB A:ASP113 4.9 0.0 1.0 HD21 A:ASN111 5.0 0.0 1.0 CG2 A:THR117 5.0 0.0 1.0

Calcium binding site 3 out of 3 in the Structure of Yeast Frequenin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Yeast Frequenin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:0.0 occ:1.00 HA A:ILE164 2.0 0.0 1.0 OE1 A:GLU168 2.4 0.0 1.0 OD2 A:ASP161 2.5 0.0 1.0 OD1 A:ASP157 2.5 0.0 1.0 O A:TYR163 2.5 0.0 1.0 OD1 A:ASN159 2.5 0.0 1.0 OE2 A:GLU168 2.6 0.0 1.0 CG A:ASP161 2.7 0.0 1.0 OD1 A:ASP161 2.7 0.0 1.0 CD A:GLU168 2.8 0.0 1.0 HG13 A:ILE164 2.8 0.0 1.0 CA A:ILE164 3.0 0.0 1.0 HB A:ILE164 3.2 0.0 1.0 H A:THR165 3.3 0.0 1.0 C A:TYR163 3.4 0.0 1.0 CB A:ILE164 3.4 0.0 1.0 CG A:ASN159 3.6 0.0 1.0 CG1 A:ILE164 3.6 0.0 1.0 N A:ILE164 3.6 0.0 1.0 CG A:ASP157 3.7 0.0 1.0 HE1 A:TYR115 3.7 0.0 1.0 HD22 A:ASN159 3.8 0.0 1.0 HG1 A:THR165 3.8 0.0 1.0 HA A:ASP157 3.8 0.0 1.0 HB2 A:ASP161 3.9 0.0 1.0 CB A:ASP161 3.9 0.0 1.0 N A:THR165 4.0 0.0 1.0 C A:ILE164 4.0 0.0 1.0 ND2 A:ASN159 4.1 0.0 1.0 HG12 A:ILE164 4.2 0.0 1.0 CG A:GLU168 4.2 0.0 1.0 HD1 A:TYR115 4.3 0.0 1.0 OD2 A:ASP157 4.4 0.0 1.0 HB2 A:GLU168 4.5 0.0 1.0 HB3 A:ASP161 4.5 0.0 1.0 HB2 A:ASN159 4.6 0.0 1.0 OG1 A:THR165 4.6 0.0 1.0 H A:ILE164 4.6 0.0 1.0 CE1 A:TYR115 4.6 0.0 1.0 HD13 A:ILE164 4.6 0.0 1.0 HG3 A:GLU168 4.7 0.0 1.0 HB3 A:GLU168 4.7 0.0 1.0 CA A:ASP157 4.7 0.0 1.0 CB A:ASP157 4.7 0.0 1.0 CB A:ASN159 4.7 0.0 1.0 CD1 A:ILE164 4.7 0.0 1.0 CB A:GLU168 4.8 0.0 1.0 CA A:TYR163 4.8 0.0 1.0 HG2 A:GLU168 4.9 0.0 1.0 H A:TYR163 4.9 0.0 1.0 CD1 A:TYR115 4.9 0.0 1.0 HB2 A:ASP157 4.9 0.0 1.0 CG2 A:ILE164 4.9 0.0 1.0 H A:ASP161 4.9 0.0 1.0 N A:ASP161 5.0 0.0 1.0 CA A:ASP161 5.0 0.0 1.0

J.B.Ames, K.B.Hendricks, T.Strahl, I.G.Huttner, N.Hamasaki, J.Thorner. Structure and Calcium-Binding Properties of FRQ1, A Novel Calcium Sensor in the Yeast Saccharomyces Cerevisiae. Biochemistry V. 39 12149 2000.
ISSN: ISSN 0006-2960
PubMed: 11015193
DOI: 10.1021/BI0012890