Atomistry » Calcium » PDB 1fn7-1fzc » 1fs9
Atomistry »
  Calcium »
    PDB 1fn7-1fzc »
      1fs9 »

Calcium in PDB 1fs9: Cytochrome C Nitrite Reductase From Wolinella Succinogenes-Azide Complex

Protein crystallography data

The structure of Cytochrome C Nitrite Reductase From Wolinella Succinogenes-Azide Complex, PDB code: 1fs9 was solved by O.Einsle, P.Stach, A.Messerschmidt, J.Simon, A.Kroeger, R.Huber, P.M.H.Kroneck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.00
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 119.532, 119.532, 186.056, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 20.8

Other elements in 1fs9:

The structure of Cytochrome C Nitrite Reductase From Wolinella Succinogenes-Azide Complex also contains other interesting chemical elements:

Iron (Fe) 5 atoms
Yttrium (Y) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Cytochrome C Nitrite Reductase From Wolinella Succinogenes-Azide Complex (pdb code 1fs9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cytochrome C Nitrite Reductase From Wolinella Succinogenes-Azide Complex, PDB code: 1fs9:

Calcium binding site 1 out of 1 in 1fs9

Go back to Calcium Binding Sites List in 1fs9
Calcium binding site 1 out of 1 in the Cytochrome C Nitrite Reductase From Wolinella Succinogenes-Azide Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cytochrome C Nitrite Reductase From Wolinella Succinogenes-Azide Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca513

b:31.7
occ:1.00
O A:LYS274 2.3 22.4 1.0
OE1 A:GLN276 2.4 32.2 1.0
O A:TYR218 2.4 26.5 1.0
OE2 A:GLU217 2.4 22.3 1.0
O A:HOH603 2.5 25.6 1.0
OE1 A:GLU217 2.6 22.2 1.0
O A:HOH728 2.6 32.9 1.0
CD A:GLU217 2.8 26.9 1.0
C A:LYS274 3.5 23.2 1.0
C A:TYR218 3.6 28.1 1.0
CD A:GLN276 3.6 31.2 1.0
OH A:TYR255 3.8 20.7 1.0
N A:TYR218 4.0 25.5 1.0
NE2 A:GLN276 4.2 30.4 1.0
N A:GLN276 4.2 22.1 1.0
CA A:ALA275 4.2 24.0 1.0
OD2 A:ASP262 4.3 24.5 1.0
CG A:GLU217 4.3 27.0 1.0
N A:ALA275 4.3 21.6 1.0
CA A:TYR218 4.4 26.5 1.0
N A:TYR219 4.5 26.9 1.0
C A:ALA275 4.5 24.2 1.0
CA A:LYS274 4.5 22.1 1.0
CA A:TYR219 4.6 28.2 1.0
CB A:TYR219 4.6 28.5 1.0
CZ3 A:TRP391 4.6 21.0 1.0
CB A:LYS274 4.7 21.3 1.0
CZ A:TYR255 4.7 20.6 1.0
OD1 A:ASP262 4.7 25.6 1.0
CG A:GLN276 4.7 28.3 1.0
N A:LYS274 4.8 20.1 1.0
CB A:GLN276 4.8 21.1 1.0
CG A:ASP262 4.9 28.3 1.0
CH2 A:TRP391 5.0 25.4 1.0
O A:HOH711 5.0 38.1 1.0

Reference:

O.Einsle, P.Stach, A.Messerschmidt, J.Simon, A.Kroger, R.Huber, P.M.Kroneck. Cytochrome C Nitrite Reductase From Wolinella Succinogenes. Structure at 1.6 A Resolution, Inhibitor Binding, and Heme-Packing Motifs. J.Biol.Chem. V. 275 39608 2000.
ISSN: ISSN 0021-9258
PubMed: 10984487
DOI: 10.1074/JBC.M006188200
Page generated: Thu Jul 11 08:17:10 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy