Calcium in PDB 1fwx: Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
Enzymatic activity of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
All present enzymatic activity of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans:
1.7.99.6;
Protein crystallography data
The structure of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans, PDB code: 1fwx
was solved by
K.Brown,
K.Djinovic-Carugo,
T.Haltia,
I.Cabrito,
M.Saraste,
J.J.Moura,
I.Moura,
M.Tegoni,
C.Cambillau,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.83 /
1.60
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
102.595,
105.090,
116.696,
90.00,
110.69,
90.00
|
R / Rfree (%)
|
24.1 /
26.4
|
Other elements in 1fwx:
The structure of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
(pdb code 1fwx). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 11 binding sites of Calcium where determined in the
Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans, PDB code: 1fwx:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 11 in 1fwx
Go back to
Calcium Binding Sites List in 1fwx
Calcium binding site 1 out
of 11 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4903
b:21.4
occ:1.00
|
O
|
A:HOH5018
|
2.4
|
23.3
|
1.0
|
O
|
A:TYR204
|
2.4
|
21.5
|
1.0
|
OD2
|
A:ASP221
|
2.5
|
25.7
|
1.0
|
O
|
A:MET215
|
2.5
|
26.6
|
1.0
|
OD1
|
A:ASN268
|
2.5
|
23.5
|
1.0
|
OE2
|
A:GLU207
|
2.6
|
23.8
|
1.0
|
OE1
|
A:GLU207
|
2.6
|
23.9
|
1.0
|
OD1
|
A:ASP221
|
2.6
|
25.8
|
1.0
|
CG
|
A:ASP221
|
2.9
|
25.9
|
1.0
|
CD
|
A:GLU207
|
2.9
|
24.0
|
1.0
|
CG
|
A:ASN268
|
3.4
|
23.6
|
1.0
|
C
|
A:TYR204
|
3.5
|
21.6
|
1.0
|
C
|
A:MET215
|
3.6
|
26.6
|
1.0
|
ND2
|
A:ASN268
|
3.9
|
23.3
|
1.0
|
CA
|
A:THR216
|
4.1
|
27.1
|
1.0
|
N
|
A:THR216
|
4.2
|
26.8
|
1.0
|
CA
|
A:ASN205
|
4.3
|
22.2
|
1.0
|
N
|
A:ASN205
|
4.3
|
21.8
|
1.0
|
N
|
A:ASN268
|
4.4
|
24.6
|
1.0
|
N
|
A:SER206
|
4.4
|
22.8
|
1.0
|
OD1
|
A:ASN267
|
4.4
|
26.9
|
1.0
|
CB
|
A:ASP221
|
4.4
|
25.9
|
1.0
|
CA
|
A:TYR204
|
4.4
|
21.4
|
1.0
|
CG
|
A:GLU207
|
4.4
|
24.1
|
1.0
|
CA
|
A:ASN268
|
4.5
|
23.9
|
1.0
|
O
|
A:ALA218
|
4.6
|
29.4
|
1.0
|
CB
|
A:ASN268
|
4.6
|
23.7
|
1.0
|
CA
|
A:MET215
|
4.6
|
26.6
|
1.0
|
CB
|
A:ALA218
|
4.6
|
29.1
|
1.0
|
OG
|
A:SER206
|
4.7
|
23.1
|
1.0
|
C
|
A:THR216
|
4.8
|
27.4
|
1.0
|
C
|
A:ASN205
|
4.9
|
22.4
|
1.0
|
N
|
A:ALA218
|
4.9
|
28.8
|
1.0
|
|
Calcium binding site 2 out
of 11 in 1fwx
Go back to
Calcium Binding Sites List in 1fwx
Calcium binding site 2 out
of 11 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4904
b:74.9
occ:1.00
|
O
|
A:HOH5504
|
2.6
|
35.6
|
1.0
|
OD1
|
A:ASP366
|
3.0
|
29.0
|
1.0
|
OD2
|
A:ASP366
|
3.4
|
29.0
|
1.0
|
O
|
A:MET424
|
3.6
|
23.4
|
1.0
|
CG
|
A:ASP366
|
3.6
|
28.9
|
1.0
|
O
|
A:LYS367
|
3.9
|
26.6
|
1.0
|
CD1
|
A:LEU368
|
4.4
|
25.8
|
1.0
|
N
|
A:MET424
|
4.5
|
24.4
|
1.0
|
CB
|
A:LYS423
|
4.5
|
25.7
|
1.0
|
C
|
A:MET424
|
4.6
|
23.4
|
1.0
|
C
|
A:LYS367
|
4.8
|
26.8
|
1.0
|
O
|
A:HOH5086
|
5.0
|
27.4
|
1.0
|
CB
|
A:LEU368
|
5.0
|
25.9
|
1.0
|
CA
|
A:LEU368
|
5.0
|
26.1
|
1.0
|
|
Calcium binding site 3 out
of 11 in 1fwx
Go back to
Calcium Binding Sites List in 1fwx
Calcium binding site 3 out
of 11 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4905
b:17.9
occ:1.00
|
O
|
B:HOH6542
|
2.3
|
15.5
|
1.0
|
O
|
A:LYS397
|
2.3
|
18.4
|
1.0
|
O
|
B:HOH6541
|
2.3
|
14.4
|
1.0
|
OE1
|
A:GLU412
|
2.3
|
18.3
|
1.0
|
O
|
A:HOH5615
|
2.3
|
20.5
|
1.0
|
O
|
A:HOH4981
|
2.4
|
16.8
|
1.0
|
CD
|
A:GLU412
|
3.0
|
17.8
|
1.0
|
OE2
|
A:GLU412
|
3.0
|
18.3
|
1.0
|
C
|
A:LYS397
|
3.4
|
18.5
|
1.0
|
OD1
|
B:ASP523
|
4.1
|
18.5
|
1.0
|
CA
|
A:LYS397
|
4.2
|
18.6
|
1.0
|
CD1
|
B:TRP563
|
4.2
|
14.7
|
1.0
|
N
|
A:PHE398
|
4.3
|
18.4
|
1.0
|
O
|
A:LYS410
|
4.4
|
14.2
|
1.0
|
O
|
B:HOH5828
|
4.4
|
15.8
|
1.0
|
CG
|
A:GLU412
|
4.4
|
17.4
|
1.0
|
CA
|
A:PHE398
|
4.5
|
18.3
|
1.0
|
O
|
B:HOH5887
|
4.5
|
16.2
|
1.0
|
CD1
|
A:PHE398
|
4.5
|
18.5
|
1.0
|
NE1
|
B:TRP563
|
4.5
|
14.5
|
1.0
|
O
|
A:PRO411
|
4.6
|
15.2
|
1.0
|
CB
|
A:LYS397
|
4.7
|
18.6
|
1.0
|
OE1
|
A:GLU435
|
4.7
|
21.1
|
1.0
|
CA
|
A:GLU412
|
4.7
|
16.5
|
1.0
|
O
|
B:PHE564
|
4.8
|
16.4
|
1.0
|
O
|
A:HOH5062
|
4.8
|
24.9
|
1.0
|
O
|
B:ASP523
|
5.0
|
17.9
|
1.0
|
CB
|
A:GLU412
|
5.0
|
16.8
|
1.0
|
C
|
A:PRO411
|
5.0
|
15.3
|
1.0
|
CG
|
B:ASP523
|
5.0
|
18.4
|
1.0
|
|
Calcium binding site 4 out
of 11 in 1fwx
Go back to
Calcium Binding Sites List in 1fwx
Calcium binding site 4 out
of 11 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4903
b:13.8
occ:1.00
|
O
|
B:TYR204
|
2.4
|
14.8
|
1.0
|
O
|
B:MET215
|
2.4
|
17.5
|
1.0
|
O
|
B:HOH6540
|
2.4
|
15.4
|
1.0
|
OD1
|
B:ASN268
|
2.4
|
15.8
|
1.0
|
OE2
|
B:GLU207
|
2.4
|
18.0
|
1.0
|
OD2
|
B:ASP221
|
2.5
|
17.8
|
1.0
|
OD1
|
B:ASP221
|
2.5
|
17.7
|
1.0
|
OE1
|
B:GLU207
|
2.6
|
18.0
|
1.0
|
CG
|
B:ASP221
|
2.8
|
18.0
|
1.0
|
CD
|
B:GLU207
|
2.9
|
18.3
|
1.0
|
CG
|
B:ASN268
|
3.4
|
16.2
|
1.0
|
C
|
B:MET215
|
3.5
|
17.9
|
1.0
|
C
|
B:TYR204
|
3.5
|
14.7
|
1.0
|
ND2
|
B:ASN268
|
3.9
|
15.8
|
1.0
|
CA
|
B:THR216
|
4.1
|
17.8
|
1.0
|
N
|
B:THR216
|
4.2
|
17.8
|
1.0
|
CA
|
B:ASN205
|
4.3
|
15.9
|
1.0
|
N
|
B:ASN205
|
4.3
|
15.3
|
1.0
|
CB
|
B:ASP221
|
4.3
|
18.4
|
1.0
|
N
|
B:ASN268
|
4.4
|
17.9
|
1.0
|
CG
|
B:GLU207
|
4.4
|
18.4
|
1.0
|
N
|
B:SER206
|
4.4
|
16.9
|
1.0
|
CA
|
B:ASN268
|
4.5
|
16.8
|
1.0
|
CA
|
B:TYR204
|
4.5
|
14.4
|
1.0
|
CA
|
B:MET215
|
4.5
|
18.1
|
1.0
|
CB
|
B:ASN268
|
4.5
|
16.5
|
1.0
|
CB
|
B:ALA218
|
4.7
|
20.7
|
1.0
|
C
|
B:THR216
|
4.7
|
18.2
|
1.0
|
OG
|
B:SER206
|
4.7
|
17.2
|
1.0
|
O
|
B:ALA218
|
4.8
|
21.1
|
1.0
|
C
|
B:ASN205
|
4.9
|
16.3
|
1.0
|
N
|
B:ALA218
|
4.9
|
20.2
|
1.0
|
OD1
|
B:ASN267
|
4.9
|
21.9
|
1.0
|
N
|
B:ALA217
|
5.0
|
18.7
|
1.0
|
|
Calcium binding site 5 out
of 11 in 1fwx
Go back to
Calcium Binding Sites List in 1fwx
Calcium binding site 5 out
of 11 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4909
b:67.5
occ:1.00
|
O
|
B:HOH6537
|
2.1
|
21.4
|
1.0
|
O
|
B:HOH6539
|
2.2
|
24.4
|
1.0
|
O
|
B:HOH6538
|
2.4
|
27.8
|
1.0
|
O
|
B:HOH6536
|
2.4
|
27.4
|
1.0
|
O
|
B:HOH6494
|
2.9
|
50.8
|
1.0
|
O
|
B:HOH6417
|
3.8
|
43.9
|
1.0
|
OD2
|
B:ASP366
|
4.2
|
17.5
|
1.0
|
O
|
B:MET424
|
4.2
|
16.4
|
1.0
|
OD1
|
B:ASP366
|
4.3
|
17.1
|
1.0
|
O
|
B:LYS367
|
4.6
|
15.8
|
1.0
|
CG
|
B:ASP366
|
4.7
|
17.2
|
1.0
|
O
|
B:HOH5964
|
4.8
|
21.2
|
1.0
|
CD1
|
B:LEU368
|
4.8
|
16.1
|
1.0
|
CB
|
B:LYS423
|
4.9
|
19.5
|
1.0
|
|
Calcium binding site 6 out
of 11 in 1fwx
Go back to
Calcium Binding Sites List in 1fwx
Calcium binding site 6 out
of 11 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca4905
b:14.6
occ:1.00
|
O
|
B:HOH6535
|
2.2
|
11.0
|
1.0
|
O
|
B:LYS397
|
2.2
|
12.1
|
1.0
|
O
|
B:HOH6534
|
2.3
|
14.6
|
1.0
|
OE1
|
B:GLU412
|
2.3
|
15.4
|
1.0
|
O
|
A:HOH5613
|
2.3
|
7.5
|
1.0
|
O
|
A:HOH4910
|
2.3
|
11.8
|
1.0
|
OE2
|
B:GLU412
|
2.8
|
15.2
|
1.0
|
CD
|
B:GLU412
|
2.8
|
14.6
|
1.0
|
C
|
B:LYS397
|
3.4
|
12.5
|
1.0
|
OD1
|
A:ASP523
|
4.2
|
13.5
|
1.0
|
CD1
|
A:TRP563
|
4.2
|
10.4
|
1.0
|
CA
|
B:LYS397
|
4.2
|
12.6
|
1.0
|
N
|
B:PHE398
|
4.3
|
12.4
|
1.0
|
CG
|
B:GLU412
|
4.3
|
13.8
|
1.0
|
O
|
A:HOH4907
|
4.4
|
10.7
|
1.0
|
NE1
|
A:TRP563
|
4.4
|
10.4
|
1.0
|
CA
|
B:PHE398
|
4.4
|
12.5
|
1.0
|
O
|
B:LYS410
|
4.5
|
12.0
|
1.0
|
O
|
A:HOH4909
|
4.5
|
12.9
|
1.0
|
CD1
|
B:PHE398
|
4.5
|
12.1
|
1.0
|
OE1
|
B:GLU435
|
4.6
|
15.9
|
1.0
|
CB
|
B:LYS397
|
4.7
|
12.4
|
1.0
|
O
|
B:PRO411
|
4.7
|
12.1
|
1.0
|
O
|
A:PHE564
|
4.7
|
11.1
|
1.0
|
O
|
B:HOH5973
|
4.7
|
20.2
|
1.0
|
CA
|
B:GLU412
|
4.8
|
12.7
|
1.0
|
CB
|
B:GLU412
|
5.0
|
13.0
|
1.0
|
|
Calcium binding site 7 out
of 11 in 1fwx
Go back to
Calcium Binding Sites List in 1fwx
Calcium binding site 7 out
of 11 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca4903
b:17.4
occ:1.00
|
OE1
|
C:GLU207
|
2.3
|
22.8
|
1.0
|
O
|
C:TYR204
|
2.3
|
20.0
|
1.0
|
O
|
C:HOH7448
|
2.4
|
22.6
|
1.0
|
O
|
C:MET215
|
2.5
|
21.5
|
1.0
|
OD1
|
C:ASP221
|
2.5
|
23.9
|
1.0
|
OD1
|
C:ASN268
|
2.5
|
21.9
|
1.0
|
OD2
|
C:ASP221
|
2.6
|
23.9
|
1.0
|
OE2
|
C:GLU207
|
2.8
|
22.9
|
1.0
|
CD
|
C:GLU207
|
2.9
|
23.0
|
1.0
|
CG
|
C:ASP221
|
2.9
|
24.1
|
1.0
|
CG
|
C:ASN268
|
3.4
|
22.1
|
1.0
|
C
|
C:TYR204
|
3.5
|
20.1
|
1.0
|
C
|
C:MET215
|
3.5
|
22.1
|
1.0
|
ND2
|
C:ASN268
|
3.9
|
22.0
|
1.0
|
CA
|
C:THR216
|
4.0
|
22.2
|
1.0
|
N
|
C:THR216
|
4.2
|
22.1
|
1.0
|
O
|
C:HOH7337
|
4.3
|
47.6
|
1.0
|
CA
|
C:ASN205
|
4.3
|
20.5
|
1.0
|
N
|
C:ASN205
|
4.3
|
20.3
|
1.0
|
CG
|
C:GLU207
|
4.4
|
22.7
|
1.0
|
N
|
C:ASN268
|
4.4
|
23.1
|
1.0
|
CB
|
C:ASP221
|
4.4
|
24.1
|
1.0
|
CA
|
C:TYR204
|
4.4
|
19.8
|
1.0
|
N
|
C:SER206
|
4.4
|
21.1
|
1.0
|
CA
|
C:ASN268
|
4.5
|
22.6
|
1.0
|
CA
|
C:MET215
|
4.5
|
22.0
|
1.0
|
CB
|
C:ASN268
|
4.6
|
22.4
|
1.0
|
CB
|
C:ALA218
|
4.6
|
25.3
|
1.0
|
C
|
C:THR216
|
4.7
|
22.6
|
1.0
|
O
|
C:ALA218
|
4.7
|
25.8
|
1.0
|
OG
|
C:SER206
|
4.8
|
21.6
|
1.0
|
N
|
C:ALA218
|
4.8
|
24.6
|
1.0
|
OD1
|
C:ASN267
|
4.9
|
25.6
|
1.0
|
C
|
C:ASN205
|
4.9
|
20.8
|
1.0
|
N
|
C:ALA217
|
5.0
|
23.0
|
1.0
|
|
Calcium binding site 8 out
of 11 in 1fwx
Go back to
Calcium Binding Sites List in 1fwx
Calcium binding site 8 out
of 11 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca4910
b:66.7
occ:1.00
|
O
|
C:MET424
|
2.6
|
29.5
|
1.0
|
OD1
|
C:ASP366
|
3.3
|
32.4
|
1.0
|
O
|
C:HOH7238
|
3.5
|
37.9
|
1.0
|
CD1
|
C:LEU368
|
3.6
|
30.5
|
1.0
|
C
|
C:MET424
|
3.6
|
29.5
|
1.0
|
N
|
C:MET424
|
3.8
|
30.0
|
1.0
|
OD2
|
C:ASP366
|
4.1
|
32.3
|
1.0
|
CG
|
C:ASP366
|
4.1
|
32.4
|
1.0
|
CA
|
C:MET424
|
4.1
|
29.7
|
1.0
|
CB
|
C:LEU368
|
4.3
|
30.4
|
1.0
|
O
|
C:LYS367
|
4.3
|
30.9
|
1.0
|
CB
|
C:LYS423
|
4.3
|
30.9
|
1.0
|
C
|
C:LYS423
|
4.3
|
30.4
|
1.0
|
CB
|
C:MET424
|
4.3
|
29.6
|
1.0
|
O
|
C:HOH7441
|
4.4
|
42.7
|
1.0
|
CG
|
C:LEU368
|
4.5
|
30.3
|
1.0
|
CA
|
C:LYS423
|
4.7
|
30.6
|
1.0
|
CA
|
C:LEU368
|
4.7
|
30.3
|
1.0
|
N
|
C:VAL425
|
4.8
|
29.1
|
1.0
|
CD2
|
C:LEU368
|
4.9
|
30.4
|
1.0
|
C
|
C:LYS367
|
5.0
|
30.9
|
1.0
|
|
Calcium binding site 9 out
of 11 in 1fwx
Go back to
Calcium Binding Sites List in 1fwx
Calcium binding site 9 out
of 11 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca4905
b:22.1
occ:1.00
|
O
|
C:HOH7170
|
2.2
|
18.8
|
1.0
|
OE1
|
C:GLU412
|
2.2
|
22.4
|
1.0
|
O
|
C:LYS397
|
2.2
|
21.9
|
1.0
|
O
|
D:HOH8295
|
2.2
|
16.7
|
1.0
|
O
|
D:HOH8294
|
2.4
|
18.5
|
1.0
|
O
|
C:HOH7174
|
2.4
|
18.7
|
1.0
|
OE2
|
C:GLU412
|
2.8
|
22.9
|
1.0
|
CD
|
C:GLU412
|
2.8
|
22.3
|
1.0
|
C
|
C:LYS397
|
3.3
|
22.1
|
1.0
|
O
|
D:HOH7809
|
4.0
|
23.3
|
1.0
|
OD1
|
D:ASP523
|
4.1
|
22.2
|
1.0
|
CA
|
C:LYS397
|
4.2
|
21.9
|
1.0
|
N
|
C:PHE398
|
4.3
|
22.4
|
1.0
|
CD1
|
D:TRP563
|
4.3
|
17.6
|
1.0
|
CG
|
C:GLU412
|
4.3
|
22.0
|
1.0
|
O
|
D:HOH7803
|
4.3
|
18.7
|
1.0
|
CA
|
C:PHE398
|
4.4
|
22.7
|
1.0
|
O
|
C:LYS410
|
4.4
|
20.5
|
1.0
|
CD1
|
C:PHE398
|
4.5
|
22.7
|
1.0
|
CB
|
C:LYS397
|
4.6
|
21.8
|
1.0
|
NE1
|
D:TRP563
|
4.6
|
17.7
|
1.0
|
O
|
C:PRO411
|
4.7
|
20.8
|
1.0
|
CA
|
C:GLU412
|
4.7
|
21.4
|
1.0
|
O
|
D:PHE564
|
4.8
|
18.7
|
1.0
|
OE1
|
C:GLU435
|
4.8
|
22.9
|
1.0
|
CB
|
C:GLU412
|
4.9
|
21.5
|
1.0
|
CG
|
D:ASP523
|
5.0
|
22.4
|
1.0
|
O
|
D:ASP523
|
5.0
|
22.0
|
1.0
|
O
|
C:HOH6915
|
5.0
|
27.6
|
1.0
|
CE1
|
C:PHE398
|
5.0
|
22.7
|
1.0
|
C
|
C:PRO411
|
5.0
|
21.0
|
1.0
|
|
Calcium binding site 10 out
of 11 in 1fwx
Go back to
Calcium Binding Sites List in 1fwx
Calcium binding site 10 out
of 11 in the Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Nitrous Oxide Reductase From P. Denitrificans within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca4903
b:36.6
occ:1.00
|
O
|
D:TYR204
|
2.3
|
32.1
|
0.8
|
O
|
D:MET215
|
2.4
|
36.7
|
1.1
|
OE1
|
D:GLU207
|
2.5
|
32.8
|
0.5
|
OD1
|
D:ASN268
|
2.5
|
35.6
|
1.3
|
OE2
|
D:GLU207
|
2.5
|
32.7
|
0.8
|
OD1
|
D:ASP221
|
2.5
|
37.1
|
1.1
|
OD2
|
D:ASP221
|
2.5
|
37.1
|
0.7
|
CD
|
D:GLU207
|
2.8
|
32.8
|
1.1
|
CG
|
D:ASP221
|
2.9
|
37.1
|
1.2
|
C
|
D:TYR204
|
3.4
|
32.2
|
1.0
|
CG
|
D:ASN268
|
3.4
|
35.6
|
0.4
|
C
|
D:MET215
|
3.5
|
36.7
|
0.8
|
ND2
|
D:ASN268
|
3.9
|
35.6
|
0.5
|
CA
|
D:THR216
|
4.2
|
36.8
|
1.0
|
CA
|
D:ASN205
|
4.2
|
32.5
|
0.5
|
N
|
D:ASN205
|
4.2
|
32.3
|
0.4
|
N
|
D:ASN268
|
4.2
|
35.9
|
0.9
|
N
|
D:THR216
|
4.2
|
36.7
|
1.6
|
CG
|
D:GLU207
|
4.3
|
33.0
|
0.8
|
CA
|
D:TYR204
|
4.4
|
32.1
|
1.0
|
N
|
D:SER206
|
4.4
|
32.8
|
1.3
|
CB
|
D:ASP221
|
4.4
|
37.2
|
0.8
|
CA
|
D:ASN268
|
4.5
|
35.6
|
0.7
|
CA
|
D:MET215
|
4.5
|
36.6
|
0.7
|
CB
|
D:ASN268
|
4.5
|
35.6
|
0.6
|
CB
|
D:ALA218
|
4.6
|
37.1
|
1.0
|
OG
|
D:SER206
|
4.7
|
32.6
|
0.9
|
O
|
D:ALA218
|
4.7
|
37.1
|
0.5
|
C
|
D:ASN205
|
4.8
|
32.6
|
0.8
|
C
|
D:THR216
|
4.9
|
36.8
|
0.9
|
N
|
D:ALA218
|
5.0
|
37.0
|
0.6
|
|
Reference:
K.Brown,
K.Djinovic-Carugo,
T.Haltia,
I.Cabrito,
M.Saraste,
J.J.Moura,
I.Moura,
M.Tegoni,
C.Cambillau.
Revisiting the Catalytic Cuz Cluster of Nitrous Oxide (N2O) Reductase. Evidence of A Bridging Inorganic Sulfur J.Biol.Chem. V. 275 41133 2000.
ISSN: ISSN 0021-9258
PubMed: 11024061
DOI: 10.1074/JBC.M008617200
Page generated: Thu Jul 11 08:17:58 2024
|