Calcium in PDB 1fza: Crystal Structure of Fibrinogen Fragment D

The structure of Crystal Structure of Fibrinogen Fragment D, PDB code: 1fza was solved by G.Spraggon, S.J.Everse, R.F.Doolittle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	107.720, 48.080, 167.560, 90.00, 105.70, 90.00
R / Rfree (%)	26.3 / 36.3

The binding sites of Calcium atom in the Crystal Structure of Fibrinogen Fragment D (pdb code 1fza). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Fibrinogen Fragment D, PDB code: 1fza:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Fibrinogen Fragment D


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Fibrinogen Fragment D within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1 b:68.4 occ:1.00 O C:PHE322 2.3 58.5 1.0 OD2 C:ASP318 2.4 61.0 1.0 OD1 C:ASP320 2.7 31.9 1.0 O C:GLY324 2.7 60.8 1.0 N C:GLY324 3.2 62.3 1.0 CG C:ASP318 3.3 53.8 1.0 C C:PHE322 3.5 57.8 1.0 OD1 C:ASP318 3.5 51.3 1.0 C C:GLY324 3.5 61.2 1.0 O C:ASP320 3.8 51.7 1.0 CA C:GLY324 3.8 63.1 1.0 CG C:ASP320 3.9 36.0 1.0 C C:GLU323 4.2 64.8 1.0 N C:PHE322 4.2 52.8 1.0 CA C:GLU323 4.3 66.5 1.0 N C:GLU323 4.4 60.1 1.0 C C:ASP320 4.4 47.0 1.0 CA C:PHE322 4.5 56.1 1.0 OD2 C:ASP320 4.6 31.9 1.0 CB C:ASP318 4.6 44.2 1.0 N C:ASP320 4.6 36.2 1.0 N C:ASN325 4.6 56.3 1.0 CA C:ASP320 4.9 40.9 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Fibrinogen Fragment D


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Fibrinogen Fragment D within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca1 b:68.4 occ:1.00 O F:PHE322 2.3 58.5 1.0 OD2 F:ASP318 2.4 61.0 1.0 OD1 F:ASP320 2.7 31.9 1.0 O F:GLY324 2.7 60.8 1.0 N F:GLY324 3.2 62.3 1.0 CG F:ASP318 3.3 53.8 1.0 C F:PHE322 3.5 57.8 1.0 OD1 F:ASP318 3.5 51.3 1.0 C F:GLY324 3.5 61.2 1.0 O F:ASP320 3.8 51.7 1.0 CA F:GLY324 3.8 63.1 1.0 CG F:ASP320 3.9 36.0 1.0 C F:GLU323 4.2 64.8 1.0 N F:PHE322 4.2 52.8 1.0 CA F:GLU323 4.3 66.5 1.0 N F:GLU323 4.4 60.1 1.0 C F:ASP320 4.4 47.0 1.0 CA F:PHE322 4.5 56.1 1.0 OD2 F:ASP320 4.6 31.9 1.0 CB F:ASP318 4.6 44.2 1.0 N F:ASP320 4.6 36.2 1.0 N F:ASN325 4.6 56.3 1.0 CA F:ASP320 4.9 40.9 1.0

G.Spraggon, S.J.Everse, R.F.Doolittle. Crystal Structures of Fragment D From Human Fibrinogen and Its Crosslinked Counterpart From Fibrin. Nature V. 389 455 1997.
ISSN: ISSN 0028-0836
PubMed: 9333233
DOI: 10.1038/38947