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Calcium in PDB 1g0h: Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase

Enzymatic activity of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase

All present enzymatic activity of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase:
3.1.3.25;

Protein crystallography data

The structure of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase, PDB code: 1g0h was solved by K.A.Johnson, L.Chen, H.Yang, M.F.Roberts, B.Stec, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.180, 75.890, 131.810, 90.00, 90.00, 90.00
R / Rfree (%) 22.4 / 27.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase (pdb code 1g0h). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase, PDB code: 1g0h:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 1g0h

Go back to Calcium Binding Sites List in 1g0h
Calcium binding site 1 out of 4 in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca290

b:39.3
occ:1.00
 OD1 A:ASP201 2.0 57.1 1.0
OD1 A:ASP81 2.3 45.0 1.0
OD1 A:ASP84 2.4 14.8 1.0
OE2 A:GLU65 2.5 67.5 1.0
O1 A:IPD292 2.6 45.4 1.0
O7 A:IPD292 2.9 37.3 1.0
P1 A:IPD292 3.2 40.0 1.0
CG A:ASP201 3.2 43.7 1.0
CG A:ASP81 3.4 39.4 1.0
O2 A:IPD292 3.6 54.0 1.0
CG A:ASP84 3.6 23.4 1.0
C1 A:IPD292 3.7 57.6 1.0
O8 A:IPD292 3.7 40.6 1.0
CD A:GLU65 3.8 65.0 1.0
OD2 A:ASP81 3.9 34.3 1.0
C6 A:IPD292 3.9 72.1 1.0
OD2 A:ASP201 3.9 29.7 1.0
CA A:CA291 4.1 37.0 1.0
CA A:ASP84 4.1 26.0 1.0
C2 A:IPD292 4.1 64.0 1.0
O6 A:IPD292 4.2 81.4 1.0
CB A:ASP84 4.2 15.6 1.0
CB A:ASP201 4.2 30.8 1.0
CB A:ASP81 4.5 37.8 1.0
O9 A:IPD292 4.5 60.7 1.0
O A:ILE83 4.5 27.9 1.0
OE1 A:GLU65 4.6 53.5 1.0
CG A:GLU65 4.6 69.4 1.0
OD2 A:ASP84 4.7 25.7 1.0
CA A:ASP201 4.7 36.9 1.0
N A:GLY85 4.7 35.1 1.0
CG2 A:VAL200 4.9 43.4 1.0
C A:ASP84 5.0 31.9 1.0

Calcium binding site 2 out of 4 in 1g0h

Go back to Calcium Binding Sites List in 1g0h
Calcium binding site 2 out of 4 in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca291

b:37.0
occ:1.00
 O A:HOH621 2.2 37.7 1.0
O A:ILE83 2.2 27.9 1.0
OE1 A:GLU65 2.3 53.5 1.0
O7 A:IPD292 2.3 37.3 1.0
OD2 A:ASP81 2.4 34.3 1.0
O A:HOH620 2.6 48.0 1.0
OE2 A:GLU65 2.7 67.5 1.0
CD A:GLU65 2.8 65.0 1.0
CG A:ASP81 3.3 39.4 1.0
C A:ILE83 3.4 27.8 1.0
OD1 A:ASP81 3.5 45.0 1.0
P1 A:IPD292 3.8 40.0 1.0
OD1 A:ASP44 4.0 46.2 1.0
CA A:CA290 4.1 39.3 1.0
N A:ILE83 4.2 35.4 1.0
CA A:ILE83 4.3 35.5 1.0
CG A:GLU65 4.3 69.4 1.0
N A:ASP84 4.4 29.2 1.0
O8 A:IPD292 4.4 40.6 1.0
CB A:ILE83 4.5 31.3 1.0
CA A:ASP84 4.5 26.0 1.0
O9 A:IPD292 4.6 60.7 1.0
OE1 A:GLU66 4.7 64.6 1.0
OE2 A:GLU66 4.7 94.2 1.0
OG A:SER86 4.7 49.6 1.0
CB A:ASP81 4.7 37.8 1.0
CB A:GLU65 4.8 69.2 1.0
O1 A:IPD292 4.8 45.4 1.0
CG A:ASP44 4.9 42.4 1.0
CB A:SER86 5.0 26.4 1.0

Calcium binding site 3 out of 4 in 1g0h

Go back to Calcium Binding Sites List in 1g0h
Calcium binding site 3 out of 4 in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca590

b:46.4
occ:1.00
 OE1 B:GLU365 1.9 42.8 1.0
O7 B:IPD592 2.2 53.9 1.0
O B:ILE383 2.3 27.0 1.0
OD2 B:ASP381 2.5 42.9 1.0
OD1 B:ASP381 2.7 34.6 1.0
CD B:GLU365 3.0 50.0 1.0
CG B:ASP381 3.0 41.9 1.0
OE2 B:GLU365 3.4 50.3 1.0
C B:ILE383 3.5 30.8 1.0
P1 B:IPD592 3.7 55.3 1.0
O B:HOH659 3.8 80.7 1.0
OG B:SER386 3.9 70.1 1.0
CA B:CA591 4.0 43.9 1.0
N B:ILE383 4.1 33.6 1.0
CG B:GLU365 4.2 52.0 1.0
CA B:ILE383 4.2 31.9 1.0
O8 B:IPD592 4.4 58.3 1.0
OE1 B:GLU366 4.4 94.7 1.0
O9 B:IPD592 4.4 51.2 1.0
OD1 B:ASP344 4.5 40.0 1.0
N B:ASP384 4.5 27.5 1.0
CB B:ASP381 4.5 42.2 1.0
CB B:ILE383 4.5 28.0 1.0
CA B:ASP384 4.5 28.8 1.0
O1 B:IPD592 4.6 70.5 1.0
CB B:GLU365 4.6 52.1 1.0
OE2 B:GLU366 4.7 98.2 1.0
CD B:GLU366 5.0 89.0 1.0

Calcium binding site 4 out of 4 in 1g0h

Go back to Calcium Binding Sites List in 1g0h
Calcium binding site 4 out of 4 in the Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of MJ0109 Gene Product Inositol Monophosphatase-Fructose 1,6 Bisphosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca591

b:43.9
occ:1.00
 OD1 B:ASP501 2.1 48.9 1.0
O1 B:IPD592 2.3 70.5 1.0
OD1 B:ASP381 2.4 34.6 1.0
OD1 B:ASP384 2.4 20.2 1.0
OE2 B:GLU365 2.6 50.3 1.0
O7 B:IPD592 2.9 53.9 1.0
P1 B:IPD592 3.1 55.3 1.0
CG B:ASP501 3.3 50.2 1.0
O2 B:IPD592 3.3 55.2 1.0
C1 B:IPD592 3.5 74.9 1.0
CG B:ASP381 3.6 41.9 1.0
CG B:ASP384 3.6 33.8 1.0
CD B:GLU365 3.7 50.0 1.0
C2 B:IPD592 3.8 76.9 1.0
CA B:CA590 4.0 46.4 1.0
C6 B:IPD592 4.0 80.2 1.0
OE1 B:GLU365 4.0 42.8 1.0
OD2 B:ASP501 4.0 59.2 1.0
O8 B:IPD592 4.1 58.3 1.0
CB B:ASP384 4.2 28.2 1.0
CA B:ASP384 4.2 28.8 1.0
O9 B:IPD592 4.2 51.2 1.0
O6 B:IPD592 4.4 68.8 1.0
CB B:ASP501 4.4 48.3 1.0
CB B:ASP381 4.4 42.2 1.0
O B:ILE383 4.4 27.0 1.0
OD2 B:ASP381 4.5 42.9 1.0
NH2 B:ARG498 4.6 0.4 1.0
OD2 B:ASP384 4.6 40.5 1.0
CA B:ASP501 4.7 43.0 1.0
CG B:GLU365 5.0 52.0 1.0
N B:GLY385 5.0 32.3 1.0

Reference:

K.A.Johnson, L.Chen, H.Yang, M.F.Roberts, B.Stec. Crystal Structure and Catalytic Mechanism of the MJ0109 Gene Product: A Bifunctional Enzyme with Inositol Monophosphatase and Fructose 1,6-Bisphosphatase Activities. Biochemistry V. 40 618 2001.
ISSN: ISSN 0006-2960
PubMed: 11170378
DOI: 10.1021/BI0016422
Page generated: Sat Dec 12 02:56:54 2020

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