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Calcium in PDB 1g1i: Crystal Structure of the Oligomerization Domain From Rotavirus NSP4

Protein crystallography data

The structure of Crystal Structure of the Oligomerization Domain From Rotavirus NSP4, PDB code: 1g1i was solved by G.D.Bowman, I.M.Nodelman, C.E.Schutt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.07 / 2.00
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 35.470, 35.399, 60.937, 90.00, 90.00, 90.00
R / Rfree (%) 23.5 / 24.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Oligomerization Domain From Rotavirus NSP4 (pdb code 1g1i). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Oligomerization Domain From Rotavirus NSP4, PDB code: 1g1i:

Calcium binding site 1 out of 1 in 1g1i

Go back to Calcium Binding Sites List in 1g1i
Calcium binding site 1 out of 1 in the Crystal Structure of the Oligomerization Domain From Rotavirus NSP4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Oligomerization Domain From Rotavirus NSP4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:37.1
occ:0.50
OE1 B:GLN123 2.4 29.1 1.0
O A:HOH202 2.4 25.6 1.0
OE1 A:GLN123 2.5 22.8 1.0
OE1 A:GLU120 2.8 24.5 1.0
CD A:GLN123 3.4 23.5 1.0
CD B:GLN123 3.5 26.6 1.0
O A:HOH230 3.7 22.6 0.5
CD A:GLU120 3.7 23.8 1.0
NE2 A:GLN123 3.7 22.8 1.0
OE2 A:GLU120 3.8 26.2 1.0
NE2 B:GLN123 3.9 21.3 1.0
O B:HOH235 4.7 35.4 1.0
CG B:GLN123 4.7 24.1 1.0
CG A:GLN123 4.8 20.1 1.0
CB B:GLN123 4.9 19.6 1.0

Reference:

G.D.Bowman, I.M.Nodelman, O.Levy, S.L.Lin, P.Tian, T.J.Zamb, S.A.Udem, B.Venkataraghavan, C.E.Schutt. Crystal Structure of the Oligomerization Domain of NSP4 From Rotavirus Reveals A Core Metal-Binding Site. J.Mol.Biol. V. 304 861 2000.
ISSN: ISSN 0022-2836
PubMed: 11124032
DOI: 10.1006/JMBI.2000.4250
Page generated: Sat Dec 12 02:56:55 2020

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