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Calcium in PDB 1g8g: Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps

Enzymatic activity of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps

All present enzymatic activity of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps:
2.7.7.4;

Protein crystallography data

The structure of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps, PDB code: 1g8g was solved by T.C.Ullrich, M.Blaesse, R.Huber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.85 / 2.60
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 185.922, 185.922, 223.674, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 22.7

Other elements in 1g8g:

The structure of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps also contains other interesting chemical elements:

Cadmium (Cd) 11 atoms
Magnesium (Mg) 2 atoms
Sodium (Na) 12 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps (pdb code 1g8g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps, PDB code: 1g8g:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 1 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca517

b:40.2
occ:1.00
 OD1 A:ASP151 2.2 38.4 1.0
OD2 A:ASP151 2.6 38.4 1.0
CG A:ASP151 2.7 37.0 1.0
CB A:ASP151 4.2 34.2 1.0
O A:HOH1177 4.5 50.0 1.0
O A:HOH1296 4.6 47.2 1.0
O A:PHE146 4.7 37.7 1.0
NZ A:LYS125 4.8 36.5 1.0
O A:HOH1348 4.8 37.5 1.0

Calcium binding site 2 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 2 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca519

b:68.8
occ:1.00
 OD1 A:ASP303 2.2 38.7 1.0
CG A:ASP303 3.1 39.3 1.0
OD2 A:ASP303 3.3 39.5 1.0
O A:HOH1229 3.8 59.6 1.0
O A:HOH1266 4.0 39.5 1.0
NZ A:LYS297 4.1 53.0 1.0
CB A:ASP303 4.5 38.2 1.0
CD A:PRO307 4.5 32.1 1.0
CE A:LYS297 4.6 49.7 1.0

Calcium binding site 3 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 3 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca520

b:48.7
occ:1.00
 O A:HOH733 2.2 34.2 1.0
OD1 A:ASP489 2.4 53.8 1.0
CG A:ASP489 2.9 52.8 1.0
OD2 A:ASP489 3.3 56.6 1.0
CB A:ASP489 3.9 46.5 1.0

Calcium binding site 4 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 4 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca535

b:42.0
occ:1.00
 OD1 B:ASP151 2.2 37.4 1.0
OD2 B:ASP151 2.3 38.4 1.0
CG B:ASP151 2.6 36.9 1.0
CB B:ASP151 4.1 35.4 1.0
O B:PHE146 4.5 33.4 1.0
NZ B:LYS125 4.7 33.5 1.0
O B:HOH1126 4.7 34.2 1.0
O B:HOH1390 4.7 36.5 1.0
CA B:ASP151 4.9 34.2 1.0

Calcium binding site 5 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 5 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca537

b:70.9
occ:1.00
 OD1 B:ASP303 2.3 37.4 1.0
CG B:ASP303 3.0 36.0 1.0
OD2 B:ASP303 3.1 34.8 1.0
O B:HOH1321 3.3 52.0 1.0
NZ B:LYS297 3.9 47.1 1.0
NH1 B:ARG290 4.3 57.8 1.0
CD B:PRO307 4.5 29.7 1.0
CB B:ASP303 4.5 36.2 1.0
CE B:LYS297 4.5 45.4 1.0

Calcium binding site 6 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 6 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca538

b:34.9
occ:1.00
 O B:HOH778 1.8 33.5 1.0
OD2 B:ASP489 2.5 29.7 1.0
OD1 B:ASP489 2.8 32.9 1.0
CG B:ASP489 3.0 30.9 1.0
O B:HOH1300 3.8 41.9 1.0
CB B:ASP489 4.5 28.2 1.0
OG B:SER487 4.8 39.1 1.0

Reference:

T.C.Ullrich, M.Blaesse, R.Huber. Crystal Structure of Atp Sulfurylase From Saccharomyces Cerevisiae, A Key Enzyme in Sulfate Activation. Embo J. V. 20 316 2001.
ISSN: ISSN 0261-4189
PubMed: 11157739
DOI: 10.1093/EMBOJ/20.3.316
Page generated: Thu Jul 11 08:35:36 2024

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