Atomistry » Calcium » PDB 1g8g-1gj6 » 1g8g
Atomistry »
  Calcium »
    PDB 1g8g-1gj6 »
      1g8g »

Calcium in PDB 1g8g: Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps

Enzymatic activity of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps

All present enzymatic activity of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps:
2.7.7.4;

Protein crystallography data

The structure of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps, PDB code: 1g8g was solved by T.C.Ullrich, M.Blaesse, R.Huber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.85 / 2.60
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 185.922, 185.922, 223.674, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 22.7

Other elements in 1g8g:

The structure of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps also contains other interesting chemical elements:

Cadmium (Cd) 11 atoms
Magnesium (Mg) 2 atoms
Sodium (Na) 12 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps (pdb code 1g8g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps, PDB code: 1g8g:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 1 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca517

b:40.2
occ:1.00
OD1 A:ASP151 2.2 38.4 1.0
OD2 A:ASP151 2.6 38.4 1.0
CG A:ASP151 2.7 37.0 1.0
CB A:ASP151 4.2 34.2 1.0
O A:HOH1177 4.5 50.0 1.0
O A:HOH1296 4.6 47.2 1.0
O A:PHE146 4.7 37.7 1.0
NZ A:LYS125 4.8 36.5 1.0
O A:HOH1348 4.8 37.5 1.0

Calcium binding site 2 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 2 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca519

b:68.8
occ:1.00
OD1 A:ASP303 2.2 38.7 1.0
CG A:ASP303 3.1 39.3 1.0
OD2 A:ASP303 3.3 39.5 1.0
O A:HOH1229 3.8 59.6 1.0
O A:HOH1266 4.0 39.5 1.0
NZ A:LYS297 4.1 53.0 1.0
CB A:ASP303 4.5 38.2 1.0
CD A:PRO307 4.5 32.1 1.0
CE A:LYS297 4.6 49.7 1.0

Calcium binding site 3 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 3 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca520

b:48.7
occ:1.00
O A:HOH733 2.2 34.2 1.0
OD1 A:ASP489 2.4 53.8 1.0
CG A:ASP489 2.9 52.8 1.0
OD2 A:ASP489 3.3 56.6 1.0
CB A:ASP489 3.9 46.5 1.0

Calcium binding site 4 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 4 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca535

b:42.0
occ:1.00
OD1 B:ASP151 2.2 37.4 1.0
OD2 B:ASP151 2.3 38.4 1.0
CG B:ASP151 2.6 36.9 1.0
CB B:ASP151 4.1 35.4 1.0
O B:PHE146 4.5 33.4 1.0
NZ B:LYS125 4.7 33.5 1.0
O B:HOH1126 4.7 34.2 1.0
O B:HOH1390 4.7 36.5 1.0
CA B:ASP151 4.9 34.2 1.0

Calcium binding site 5 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 5 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca537

b:70.9
occ:1.00
OD1 B:ASP303 2.3 37.4 1.0
CG B:ASP303 3.0 36.0 1.0
OD2 B:ASP303 3.1 34.8 1.0
O B:HOH1321 3.3 52.0 1.0
NZ B:LYS297 3.9 47.1 1.0
NH1 B:ARG290 4.3 57.8 1.0
CD B:PRO307 4.5 29.7 1.0
CB B:ASP303 4.5 36.2 1.0
CE B:LYS297 4.5 45.4 1.0

Calcium binding site 6 out of 6 in 1g8g

Go back to Calcium Binding Sites List in 1g8g
Calcium binding site 6 out of 6 in the Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Atp Sulfurylase From S. Cerevisiae: the Binary Product Complex with Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca538

b:34.9
occ:1.00
O B:HOH778 1.8 33.5 1.0
OD2 B:ASP489 2.5 29.7 1.0
OD1 B:ASP489 2.8 32.9 1.0
CG B:ASP489 3.0 30.9 1.0
O B:HOH1300 3.8 41.9 1.0
CB B:ASP489 4.5 28.2 1.0
OG B:SER487 4.8 39.1 1.0

Reference:

T.C.Ullrich, M.Blaesse, R.Huber. Crystal Structure of Atp Sulfurylase From Saccharomyces Cerevisiae, A Key Enzyme in Sulfate Activation. Embo J. V. 20 316 2001.
ISSN: ISSN 0261-4189
PubMed: 11157739
DOI: 10.1093/EMBOJ/20.3.316
Page generated: Thu Jul 11 08:35:36 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy