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Calcium in PDB 1g9u: Crystal Structure of Yopm-Leucine Rich Effector Protein From Yersinia Pestis

Protein crystallography data

The structure of Crystal Structure of Yopm-Leucine Rich Effector Protein From Yersinia Pestis, PDB code: 1g9u was solved by A.G.Evdokimov, D.E.Anderson, K.M.Routzahn, D.S.Waugh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 100.00 / 2.35
Space group P 42 2 2
Cell size a, b, c (Å), α, β, γ (°) 109.359, 109.359, 101.499, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 23

Other elements in 1g9u:

The structure of Crystal Structure of Yopm-Leucine Rich Effector Protein From Yersinia Pestis also contains other interesting chemical elements:

Mercury (Hg) 8 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Yopm-Leucine Rich Effector Protein From Yersinia Pestis (pdb code 1g9u). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Yopm-Leucine Rich Effector Protein From Yersinia Pestis, PDB code: 1g9u:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1g9u

Go back to Calcium Binding Sites List in 1g9u
Calcium binding site 1 out of 2 in the Crystal Structure of Yopm-Leucine Rich Effector Protein From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Yopm-Leucine Rich Effector Protein From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2001

b:20.2
occ:1.00
O A:HOH3164 2.2 50.8 1.0
OD2 A:ASP266 2.3 17.1 1.0
OD1 A:ASN246 2.4 20.7 1.0
O A:HOH3112 2.5 19.9 1.0
O A:HOH3110 2.5 22.5 1.0
CG A:ASP266 3.4 18.4 1.0
CG A:ASN246 3.5 15.8 1.0
O A:HOH3105 3.9 27.5 1.0
CB A:ASP266 4.0 7.0 1.0
ND2 A:ASN246 4.1 14.4 1.0
OE1 A:GLU286 4.3 27.6 1.0
O A:HOH3111 4.4 21.1 1.0
OD1 A:ASP266 4.4 17.7 1.0
CB A:ASN246 4.6 6.8 1.0
O A:HOH3047 4.9 33.2 1.0
OE2 A:GLU286 5.0 53.8 1.0

Calcium binding site 2 out of 2 in 1g9u

Go back to Calcium Binding Sites List in 1g9u
Calcium binding site 2 out of 2 in the Crystal Structure of Yopm-Leucine Rich Effector Protein From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Yopm-Leucine Rich Effector Protein From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2002

b:22.9
occ:1.00
O A:HOH3113 2.4 24.2 1.0
O A:HOH3111 2.4 21.1 1.0
OD1 A:ASP266 2.6 17.7 1.0
O A:HOH3115 2.7 13.9 1.0
O A:HOH3114 2.8 18.1 1.0
CG A:ASP266 3.5 18.4 1.0
OD2 A:ASP266 3.8 17.1 1.0
O A:GLU286 4.5 21.7 1.0
O A:ASN267 4.6 19.8 1.0
CB A:ASP266 4.8 7.0 1.0
CA A:ASP266 4.8 2.5 1.0
OE1 A:GLU286 4.9 27.6 1.0
C A:ASP266 4.9 7.5 1.0

Reference:

A.G.Evdokimov, D.E.Anderson, K.M.Routzahn, D.S.Waugh. Unusual Molecular Architecture of the Yersinia Pestis Cytotoxin Yopm: A Leucine-Rich Repeat Protein with the Shortest Repeating Unit. J.Mol.Biol. V. 312 807 2001.
ISSN: ISSN 0022-2836
PubMed: 11575934
DOI: 10.1006/JMBI.2001.4973
Page generated: Sat Dec 12 02:57:33 2020

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