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Calcium in PDB 1go7: The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant

Protein crystallography data

The structure of The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant, PDB code: 1go7 was solved by T.Hege, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.22 / 2.1
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 102.700, 102.700, 121.270, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 20.4

Other elements in 1go7:

The structure of The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant (pdb code 1go7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant, PDB code: 1go7:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in 1go7

Go back to Calcium Binding Sites List in 1go7
Calcium binding site 1 out of 7 in the The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1480

b:16.6
occ:1.00
O P:THR339 2.3 14.3 1.0
OD1 P:ASP302 2.3 15.2 1.0
OE1 P:GLU341 2.4 20.2 1.0
O P:HOH2226 2.4 13.9 1.0
O P:GLY300 2.4 14.7 1.0
O P:HOH2255 2.5 16.9 1.0
OE2 P:GLU341 2.5 14.5 1.0
CD P:GLU341 2.8 18.4 1.0
CG P:ASP302 3.4 15.7 1.0
C P:THR339 3.5 17.2 1.0
C P:GLY300 3.5 19.3 1.0
N P:ASP302 4.2 17.7 1.0
CB P:ASP302 4.2 18.2 1.0
N P:GLY300 4.2 16.7 1.0
C P:GLY299 4.3 16.2 1.0
OD2 P:ASP302 4.3 14.2 1.0
CB P:THR339 4.3 18.1 1.0
CG P:GLU341 4.3 15.8 1.0
O P:GLY299 4.3 16.3 1.0
CA P:THR301 4.4 17.8 1.0
N P:THR301 4.4 16.4 1.0
N P:ILE340 4.4 17.2 1.0
CA P:ILE340 4.4 17.7 1.0
O P:HOH2227 4.4 19.9 1.0
CA P:THR339 4.5 15.0 1.0
CA P:GLY300 4.5 14.8 1.0
OD1 P:ASP297 4.5 17.9 1.0
CG2 P:THR339 4.6 14.8 1.0
C P:THR301 4.7 17.4 1.0
N P:THR339 4.9 15.5 1.0
CA P:ASP302 4.9 17.6 1.0
N P:GLU341 4.9 16.6 1.0
CA P:GLY299 4.9 16.5 1.0
O P:HOH2096 5.0 21.4 1.0

Calcium binding site 2 out of 7 in 1go7

Go back to Calcium Binding Sites List in 1go7
Calcium binding site 2 out of 7 in the The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1481

b:21.7
occ:1.00
O P:GLY346 2.2 21.9 1.0
OD1 P:ASP368 2.3 20.6 1.0
OD2 P:ASP350 2.3 19.4 1.0
O P:ALA365 2.3 22.3 1.0
O P:GLY363 2.3 20.9 1.0
O P:GLY348 2.4 23.7 1.0
OD2 P:ASP368 2.9 19.7 1.0
CG P:ASP368 3.0 21.4 1.0
CG P:ASP350 3.3 21.5 1.0
C P:GLY346 3.4 21.9 1.0
C P:GLY363 3.5 19.5 1.0
C P:ALA365 3.6 22.4 1.0
C P:GLY348 3.6 25.8 1.0
C P:GLY364 3.8 19.8 1.0
N P:GLY348 3.9 24.3 1.0
O P:GLY364 4.0 19.9 1.0
C P:SER347 4.0 25.2 1.0
N P:GLY346 4.0 21.1 1.0
OD1 P:ASP350 4.0 20.6 1.0
CB P:ASP350 4.1 21.3 1.0
N P:ALA365 4.1 22.0 1.0
CA P:GLY364 4.1 19.3 1.0
N P:ASP350 4.2 24.2 1.0
N P:GLY364 4.2 19.4 1.0
N P:SER347 4.2 21.6 1.0
CA P:SER347 4.3 23.9 1.0
CA P:GLY366 4.3 22.3 1.0
CA P:GLY346 4.3 19.0 1.0
CA P:GLY348 4.4 23.8 1.0
N P:GLY366 4.4 24.8 1.0
O P:HOH2237 4.4 21.4 1.0
CB P:ASP368 4.4 21.7 1.0
O P:SER347 4.5 24.2 1.0
CA P:GLY363 4.5 18.8 1.0
C P:GLY345 4.5 18.8 1.0
CA P:ALA365 4.5 23.5 1.0
N P:ASN349 4.6 24.2 1.0
C P:GLY366 4.6 25.1 1.0
CA P:ASN349 4.7 25.6 1.0
CA P:CA1483 4.8 20.2 1.0
O P:GLY366 4.8 23.0 1.0
CA P:GLY345 4.8 18.6 1.0
CA P:ASP350 4.8 21.4 1.0
C P:ASN349 4.9 24.6 1.0

Calcium binding site 3 out of 7 in 1go7

Go back to Calcium Binding Sites List in 1go7
Calcium binding site 3 out of 7 in the The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1482

b:18.2
occ:1.00
O P:ALA374 2.2 18.0 1.0
O P:ASN355 2.2 16.5 1.0
OD1 P:ASN359 2.3 15.0 1.0
O P:GLY372 2.3 18.6 1.0
OD1 P:ASP377 2.4 18.1 1.0
O P:ALA357 2.4 18.7 1.0
OD2 P:ASP377 2.8 16.5 1.0
CG P:ASP377 3.0 15.2 1.0
CG P:ASN359 3.3 14.6 1.0
C P:ASN355 3.5 18.8 1.0
C P:GLY372 3.5 17.1 1.0
C P:ALA374 3.5 16.7 1.0
C P:ALA357 3.6 17.7 1.0
N P:ASN355 4.0 20.5 1.0
C P:GLY373 4.0 19.2 1.0
N P:ALA357 4.1 18.9 1.0
O P:GLY373 4.1 18.8 1.0
C P:SER356 4.1 19.5 1.0
N P:ASN359 4.2 17.2 1.0
ND2 P:ASN359 4.2 15.5 1.0
CB P:ASN359 4.2 16.1 1.0
N P:ALA374 4.2 15.9 1.0
CA P:GLY372 4.3 18.4 1.0
N P:SER356 4.3 15.2 1.0
CA P:ASN355 4.4 20.5 1.0
N P:GLY375 4.4 15.4 1.0
N P:GLY373 4.4 18.2 1.0
CA P:GLY375 4.4 17.8 1.0
CA P:SER356 4.4 20.1 1.0
CB P:ASP377 4.4 14.2 1.0
CA P:GLY373 4.5 16.9 1.0
CA P:ALA374 4.5 17.4 1.0
CA P:ALA357 4.5 18.9 1.0
N P:ASP358 4.5 16.5 1.0
O P:SER356 4.5 18.3 1.0
OD1 P:ASN355 4.5 19.3 1.0
CA P:ASP358 4.6 18.4 1.0
C P:GLY354 4.6 22.4 1.0
CA P:CA1486 4.6 20.3 1.0
C P:GLY375 4.7 17.8 1.0
O P:GLY375 4.7 17.8 1.0
C P:ASP358 4.8 17.4 1.0
CA P:ASN359 4.8 17.1 1.0
CA P:GLY354 4.9 21.1 1.0

Calcium binding site 4 out of 7 in 1go7

Go back to Calcium Binding Sites List in 1go7
Calcium binding site 4 out of 7 in the The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1483

b:20.2
occ:1.00
O P:ALA383 2.2 26.9 1.0
OD1 P:ASP386 2.3 21.7 1.0
OD2 P:ASP368 2.3 19.7 1.0
O P:GLY364 2.4 19.9 1.0
O P:GLY381 2.5 20.8 1.0
O P:GLY366 2.5 23.0 1.0
OD2 P:ASP386 2.8 19.5 1.0
CG P:ASP386 2.9 21.7 1.0
C P:ALA383 3.4 25.2 1.0
CG P:ASP368 3.4 21.4 1.0
C P:GLY381 3.5 20.3 1.0
C P:GLY364 3.6 19.8 1.0
C P:GLY366 3.6 25.1 1.0
C P:ALA365 3.8 22.4 1.0
C P:GLY382 3.8 23.2 1.0
O P:GLY382 3.9 22.2 1.0
O P:ALA365 3.9 22.3 1.0
N P:GLY366 4.0 24.8 1.0
CB P:ASP368 4.1 21.7 1.0
N P:ASP368 4.1 21.3 1.0
CA P:GLY382 4.2 19.8 1.0
CA P:ALA365 4.2 23.5 1.0
N P:ALA383 4.2 23.6 1.0
N P:GLY384 4.2 26.1 1.0
N P:GLY382 4.3 20.9 1.0
CA P:GLY384 4.3 24.7 1.0
C P:GLY363 4.3 19.5 1.0
OD1 P:ASP368 4.3 20.6 1.0
CB P:ASP386 4.4 21.1 1.0
N P:ALA365 4.4 22.0 1.0
CA P:GLY366 4.4 22.3 1.0
N P:GLY364 4.4 19.4 1.0
CA P:ALA383 4.4 25.4 1.0
N P:ASN367 4.5 21.3 1.0
CA P:GLY381 4.6 21.3 1.0
O P:GLY363 4.6 20.9 1.0
C P:GLY384 4.6 26.9 1.0
CA P:GLY364 4.6 19.3 1.0
CA P:ASN367 4.6 24.1 1.0
CA P:GLY363 4.7 18.8 1.0
CA P:CA1484 4.7 27.5 1.0
CA P:CA1481 4.8 21.7 1.0
CA P:ASP368 4.8 22.3 1.0
O P:GLY384 4.8 24.9 1.0
C P:ASN367 4.8 23.3 1.0

Calcium binding site 5 out of 7 in 1go7

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Calcium binding site 5 out of 7 in the The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1484

b:27.5
occ:1.00
OD2 P:ASP386 2.2 19.5 1.0
O P:GLY382 2.3 22.2 1.0
OE1 P:GLN408 2.4 31.0 1.0
OD1 P:ASP412 2.4 21.8 1.0
O P:GLY384 2.5 24.9 1.0
O P:HOH2305 2.5 17.3 1.0
CG P:ASP386 3.3 21.7 1.0
OD2 P:ASP412 3.3 24.3 1.0
CG P:ASP412 3.3 22.4 1.0
C P:GLY384 3.5 26.9 1.0
C P:GLY382 3.5 23.2 1.0
CD P:GLN408 3.6 30.6 1.0
CB P:ASP386 3.8 21.1 1.0
N P:GLY384 3.9 26.1 1.0
C P:ALA383 3.9 25.2 1.0
N P:ASP386 4.1 22.9 1.0
C P:GLY381 4.2 20.3 1.0
CG P:GLN408 4.2 26.6 1.0
O P:ALA383 4.2 26.9 1.0
N P:GLY382 4.2 20.9 1.0
CA P:GLY384 4.3 24.7 1.0
OD1 P:ASP386 4.3 21.7 1.0
CA P:ALA383 4.4 25.4 1.0
N P:ALA383 4.4 23.6 1.0
O P:GLY381 4.4 20.8 1.0
N P:ARG385 4.5 27.4 1.0
CA P:GLY382 4.5 19.8 1.0
CA P:GLY381 4.5 21.3 1.0
CA P:ASP386 4.6 21.7 1.0
CA P:CA1483 4.7 20.2 1.0
NE2 P:GLN408 4.7 28.0 1.0
CA P:ARG385 4.7 26.7 1.0
CB P:ASP412 4.8 24.0 1.0
C P:ARG385 4.8 25.8 1.0
CG2 P:ILE411 4.8 24.3 1.0
CB P:GLN408 4.9 25.5 1.0

Calcium binding site 6 out of 7 in 1go7

Go back to Calcium Binding Sites List in 1go7
Calcium binding site 6 out of 7 in the The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1486

b:20.3
occ:1.00
O P:ASP395 2.3 18.9 1.0
OD2 P:ASP377 2.3 16.5 1.0
O P:GLY373 2.3 18.8 1.0
O P:HOH2297 2.3 17.3 1.0
O P:GLY375 2.4 17.8 1.0
OD1 P:ASP402 2.5 16.3 1.0
CG P:ASP377 3.3 15.2 1.0
CG P:ASP402 3.4 18.2 1.0
C P:ASP395 3.4 21.1 1.0
C P:GLY373 3.5 19.2 1.0
OD2 P:ASP402 3.5 20.5 1.0
C P:GLY375 3.6 17.8 1.0
C P:ALA374 3.8 16.7 1.0
O P:ALA374 3.8 18.0 1.0
CB P:ASP377 4.0 14.2 1.0
N P:GLY375 4.0 15.4 1.0
C P:GLY372 4.1 17.1 1.0
CA P:ASP395 4.1 19.7 1.0
N P:ASP377 4.1 16.2 1.0
N P:GLY373 4.2 18.2 1.0
OD1 P:ASP377 4.3 18.1 1.0
CA P:ALA374 4.3 17.4 1.0
O P:GLY372 4.3 18.6 1.0
N P:ALA374 4.3 15.9 1.0
CB P:ASP395 4.4 18.8 1.0
CA P:GLY375 4.4 17.8 1.0
CA P:GLY372 4.5 18.4 1.0
CA P:GLY373 4.5 16.9 1.0
N P:SER396 4.5 17.7 1.0
N P:ALA376 4.6 18.0 1.0
CA P:CA1482 4.6 18.2 1.0
CA P:SER396 4.7 18.6 1.0
CB P:ASP402 4.8 17.6 1.0
CA P:ASP377 4.8 17.3 1.0
CA P:ALA376 4.8 16.1 1.0
O P:HOH2287 4.8 19.3 1.0
CB P:SER396 4.9 16.9 1.0
C P:ALA376 4.9 16.9 1.0

Calcium binding site 7 out of 7 in 1go7

Go back to Calcium Binding Sites List in 1go7
Calcium binding site 7 out of 7 in the The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of The Metzincin'S Methionine: Prtc M226C-E189K Double Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1487

b:18.4
occ:1.00
O P:ARG265 2.2 16.9 1.0
O P:GLY299 2.3 16.3 1.0
OD2 P:ASP302 2.3 14.2 1.0
O P:GLY267 2.4 19.8 1.0
OD1 P:ASP297 2.4 17.9 1.0
OG P:SER269 2.4 14.2 1.0
OD2 P:ASP297 2.5 16.3 1.0
CG P:ASP297 2.8 18.8 1.0
CG P:ASP302 3.2 15.7 1.0
CB P:SER269 3.4 16.1 1.0
C P:ARG265 3.4 17.5 1.0
OD1 P:ASP302 3.5 15.2 1.0
C P:GLY299 3.5 16.2 1.0
C P:GLY267 3.6 19.9 1.0
N P:SER269 3.8 18.0 1.0
C P:THR266 4.0 21.4 1.0
N P:GLY267 4.1 18.3 1.0
CA P:THR266 4.2 19.4 1.0
CA P:SER269 4.2 17.6 1.0
CB P:ARG265 4.3 16.4 1.0
N P:THR266 4.3 18.4 1.0
N P:GLY299 4.3 17.4 1.0
CA P:GLY300 4.3 14.8 1.0
O P:HOH2226 4.3 13.9 1.0
CB P:ASP297 4.4 17.4 1.0
N P:GLY300 4.4 16.7 1.0
O P:THR266 4.4 20.0 1.0
CA P:ARG265 4.4 17.6 1.0
CA P:GLY267 4.4 20.5 1.0
CA P:GLY299 4.5 16.5 1.0
N P:ASP268 4.5 20.9 1.0
C P:ASP268 4.5 20.6 1.0
CB P:ASP302 4.5 18.2 1.0
O P:HOH2205 4.6 8.8 1.0
CA P:ASP268 4.6 20.0 1.0
C P:GLY300 4.6 19.3 1.0
OH P:TYR271 4.9 16.2 1.0
O P:GLY300 4.9 14.7 1.0
N P:ALA298 4.9 16.0 1.0

Reference:

T.Hege, R.E.Feltzer, R.D.Gray, U.Baumann. Crystal Structure of A Complex Between Pseudomonas Aeruginosa Alkaline Protease and Its Cognate Inhibitor: Inhibition By A Zinc-NH2 Coordinative Bond J.Biol.Chem. V. 276 35087 2001.
ISSN: ISSN 0021-9258
PubMed: 11445573
DOI: 10.1074/JBC.M104020200
Page generated: Thu Jul 11 08:44:27 2024

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