Atomistry » Calcium » PDB 1gk9-1gxo » 1go8
Atomistry »
  Calcium »
    PDB 1gk9-1gxo »
      1go8 »

Calcium in PDB 1go8: The Metzincin'S Methionine: Prtc M226L Mutant

Protein crystallography data

The structure of The Metzincin'S Methionine: Prtc M226L Mutant, PDB code: 1go8 was solved by U.Baumann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.0
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 102.015, 102.015, 121.302, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 19.7

Other elements in 1go8:

The structure of The Metzincin'S Methionine: Prtc M226L Mutant also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the The Metzincin'S Methionine: Prtc M226L Mutant (pdb code 1go8). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the The Metzincin'S Methionine: Prtc M226L Mutant, PDB code: 1go8:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 1 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1480

b:17.4
occ:1.00
O P:GLY299 2.3 17.2 1.0
OD2 P:ASP302 2.3 15.9 1.0
O P:ARG265 2.4 17.9 1.0
O P:GLY267 2.4 18.0 1.0
OG P:SER269 2.4 15.0 1.0
OD1 P:ASP297 2.5 17.8 1.0
OD2 P:ASP297 2.5 16.6 1.0
CG P:ASP297 2.8 20.0 1.0
CG P:ASP302 3.2 17.4 1.0
OD1 P:ASP302 3.4 18.4 1.0
CB P:SER269 3.5 14.1 1.0
C P:ARG265 3.5 16.6 1.0
C P:GLY299 3.5 18.1 1.0
C P:GLY267 3.6 20.8 1.0
N P:SER269 3.8 16.6 1.0
N P:GLY267 4.0 18.7 1.0
C P:THR266 4.1 20.1 1.0
CB P:ARG265 4.2 16.4 1.0
N P:GLY299 4.2 18.3 1.0
CA P:THR266 4.3 17.9 1.0
CA P:SER269 4.3 17.4 1.0
N P:THR266 4.3 19.6 1.0
CB P:ASP297 4.3 18.7 1.0
CA P:GLY300 4.4 16.9 1.0
N P:GLY300 4.4 18.0 1.0
CA P:GLY299 4.5 15.1 1.0
CA P:ARG265 4.5 18.5 1.0
CA P:GLY267 4.5 18.7 1.0
CB P:ASP302 4.5 15.8 1.0
C P:ASP268 4.5 19.6 1.0
O P:THR266 4.5 18.3 1.0
N P:ASP268 4.6 19.4 1.0
O P:HOH2235 4.6 11.1 1.0
CA P:ASP268 4.6 19.2 1.0
C P:GLY300 4.6 18.3 1.0
OH P:TYR271 4.8 16.5 1.0
O P:GLY300 4.9 18.5 1.0

Calcium binding site 2 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 2 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1481

b:18.0
occ:1.00
OD1 P:ASP302 2.3 18.4 1.0
O P:GLY300 2.4 18.5 1.0
O P:THR339 2.4 15.4 1.0
OE1 P:GLU341 2.4 15.7 1.0
O P:HOH2294 2.4 15.9 1.0
OE2 P:GLU341 2.4 16.4 1.0
CD P:GLU341 2.8 17.5 1.0
CG P:ASP302 3.5 17.4 1.0
C P:GLY300 3.5 18.3 1.0
C P:THR339 3.6 18.7 1.0
N P:ASP302 4.2 17.8 1.0
N P:GLY300 4.2 18.0 1.0
CB P:ASP302 4.2 15.8 1.0
C P:GLY299 4.3 18.1 1.0
CB P:THR339 4.3 20.8 1.0
CG P:GLU341 4.3 18.5 1.0
OD2 P:ASP302 4.3 15.9 1.0
O P:GLY299 4.3 17.2 1.0
N P:THR301 4.3 17.7 1.0
CA P:THR301 4.4 19.5 1.0
N P:ILE340 4.4 17.3 1.0
CA P:GLY300 4.5 16.9 1.0
CA P:THR339 4.5 16.8 1.0
O P:HOH2261 4.5 18.2 1.0
CA P:ILE340 4.5 18.9 1.0
OD1 P:ASP297 4.6 17.8 1.0
CG2 P:THR339 4.6 16.9 1.0
C P:THR301 4.7 17.1 1.0
N P:GLU341 4.9 17.7 1.0
O P:HOH2293 4.9 22.4 1.0
N P:THR339 4.9 20.8 1.0
CA P:ASP302 4.9 17.8 1.0
CA P:GLY299 4.9 15.1 1.0
O P:HOH2133 5.0 25.2 1.0

Calcium binding site 3 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 3 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1482

b:22.6
occ:1.00
OD1 P:ASP368 2.3 22.8 1.0
O P:ALA365 2.3 22.2 1.0
O P:GLY346 2.3 20.7 1.0
OD2 P:ASP350 2.4 21.1 1.0
O P:GLY363 2.4 19.8 1.0
O P:GLY348 2.5 23.2 1.0
OD2 P:ASP368 2.8 19.9 1.0
CG P:ASP368 2.9 22.4 1.0
CG P:ASP350 3.3 25.2 1.0
C P:GLY363 3.5 22.2 1.0
C P:GLY346 3.5 19.2 1.0
C P:ALA365 3.6 22.9 1.0
C P:GLY348 3.7 25.6 1.0
C P:GLY364 3.9 21.3 1.0
CB P:ASP350 4.0 22.0 1.0
N P:GLY348 4.0 26.1 1.0
O P:GLY364 4.1 22.8 1.0
OD1 P:ASP350 4.1 23.1 1.0
N P:GLY346 4.1 20.2 1.0
N P:ALA365 4.1 21.3 1.0
C P:SER347 4.1 26.2 1.0
CA P:GLY364 4.2 21.1 1.0
N P:ASP350 4.2 23.1 1.0
N P:GLY364 4.3 20.0 1.0
O P:HOH2301 4.3 22.8 1.0
N P:SER347 4.3 22.0 1.0
CA P:GLY366 4.4 22.1 1.0
CA P:SER347 4.4 23.3 1.0
CB P:ASP368 4.4 19.0 1.0
CA P:GLY346 4.4 19.4 1.0
N P:GLY366 4.4 24.9 1.0
CA P:GLY348 4.5 25.6 1.0
CA P:GLY363 4.5 21.3 1.0
CA P:ALA365 4.5 22.1 1.0
C P:GLY366 4.6 25.9 1.0
C P:GLY345 4.6 20.0 1.0
O P:SER347 4.6 23.6 1.0
O P:GLY366 4.6 23.6 1.0
N P:ASN349 4.7 23.8 1.0
CA P:CA1484 4.7 21.7 1.0
CA P:ASN349 4.8 24.6 1.0
CA P:ASP350 4.8 22.1 1.0
CA P:GLY345 4.9 19.7 1.0
C P:ASN349 5.0 25.1 1.0

Calcium binding site 4 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 4 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1483

b:18.8
occ:1.00
O P:ALA374 2.3 21.2 1.0
O P:ALA357 2.3 18.0 1.0
O P:ASN355 2.3 19.1 1.0
OD1 P:ASN359 2.3 20.5 1.0
O P:GLY372 2.4 19.4 1.0
OD1 P:ASP377 2.4 17.6 1.0
OD2 P:ASP377 2.9 18.3 1.0
CG P:ASP377 3.0 20.4 1.0
CG P:ASN359 3.4 16.7 1.0
C P:ALA374 3.5 19.3 1.0
C P:GLY372 3.5 20.1 1.0
C P:ASN355 3.5 20.7 1.0
C P:ALA357 3.5 19.4 1.0
N P:ASN355 4.0 19.4 1.0
C P:GLY373 4.0 20.9 1.0
N P:ALA357 4.1 20.6 1.0
C P:SER356 4.1 20.4 1.0
N P:ALA374 4.1 18.4 1.0
N P:ASN359 4.2 17.5 1.0
CB P:ASN359 4.2 14.7 1.0
O P:GLY373 4.2 19.5 1.0
ND2 P:ASN359 4.2 13.6 1.0
CA P:GLY372 4.4 19.4 1.0
N P:GLY375 4.4 17.8 1.0
CA P:GLY375 4.4 18.4 1.0
CA P:SER356 4.4 20.9 1.0
N P:SER356 4.4 17.9 1.0
CB P:ASP377 4.4 16.3 1.0
O P:SER356 4.4 20.1 1.0
CA P:ALA357 4.4 21.2 1.0
CA P:ASN355 4.4 20.2 1.0
N P:GLY373 4.5 21.1 1.0
CA P:ALA374 4.5 19.8 1.0
CA P:GLY373 4.5 18.0 1.0
N P:ASP358 4.5 18.2 1.0
OD1 P:ASN355 4.5 19.8 1.0
C P:GLY354 4.6 21.3 1.0
CA P:ASP358 4.6 19.9 1.0
CA P:CA1487 4.6 20.4 1.0
C P:GLY375 4.6 17.4 1.0
O P:GLY375 4.7 16.2 1.0
CA P:GLY354 4.7 21.0 1.0
C P:ASP358 4.8 18.6 1.0
CA P:ASN359 4.8 16.2 1.0

Calcium binding site 5 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 5 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1484

b:21.7
occ:1.00
OD1 P:ASP386 2.3 23.8 1.0
O P:ALA383 2.3 27.8 1.0
O P:GLY381 2.3 21.6 1.0
OD2 P:ASP368 2.4 19.9 1.0
O P:GLY364 2.4 22.8 1.0
O P:GLY366 2.5 23.6 1.0
OD2 P:ASP386 2.7 24.2 1.0
CG P:ASP386 2.9 23.6 1.0
CG P:ASP368 3.4 22.4 1.0
C P:GLY381 3.4 21.7 1.0
C P:ALA383 3.5 26.4 1.0
C P:GLY364 3.6 21.3 1.0
C P:GLY366 3.6 25.9 1.0
C P:ALA365 3.8 22.9 1.0
C P:GLY382 3.8 22.9 1.0
O P:ALA365 3.8 22.2 1.0
O P:GLY382 3.9 23.1 1.0
CA P:GLY382 4.1 20.9 1.0
CB P:ASP368 4.1 19.0 1.0
N P:GLY366 4.1 24.9 1.0
N P:ALA383 4.1 24.1 1.0
N P:ASP368 4.1 22.0 1.0
CA P:ALA365 4.1 22.1 1.0
N P:GLY382 4.2 21.5 1.0
N P:ALA365 4.3 21.3 1.0
CB P:ASP386 4.3 22.1 1.0
N P:GLY384 4.4 26.7 1.0
C P:GLY363 4.4 22.2 1.0
OD1 P:ASP368 4.4 22.8 1.0
CA P:ALA383 4.4 26.2 1.0
N P:GLY364 4.4 20.0 1.0
CA P:GLY384 4.4 25.2 1.0
CA P:GLY381 4.5 23.5 1.0
CA P:GLY366 4.5 22.1 1.0
N P:ASN367 4.5 23.4 1.0
CA P:ASN367 4.6 25.4 1.0
O P:GLY363 4.6 19.8 1.0
CA P:GLY364 4.6 21.1 1.0
CA P:CA1485 4.7 29.3 1.0
C P:GLY384 4.7 28.8 1.0
CA P:CA1482 4.7 22.6 1.0
CA P:GLY363 4.7 21.3 1.0
CA P:ASP368 4.8 21.0 1.0
C P:ASN367 4.8 24.2 1.0
O P:GLY384 4.8 25.1 1.0

Calcium binding site 6 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 6 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1485

b:29.3
occ:1.00
OD2 P:ASP386 2.2 24.2 1.0
OE1 P:GLN408 2.3 27.9 1.0
O P:GLY382 2.4 23.1 1.0
O P:GLY384 2.5 25.1 1.0
OD1 P:ASP412 2.5 25.0 1.0
O P:HOH2346 2.6 21.9 1.0
CG P:ASP386 3.3 23.6 1.0
OD2 P:ASP412 3.4 25.6 1.0
CG P:ASP412 3.4 25.5 1.0
CD P:GLN408 3.5 31.2 1.0
C P:GLY384 3.6 28.8 1.0
C P:GLY382 3.6 22.9 1.0
CB P:ASP386 3.8 22.1 1.0
N P:GLY384 3.9 26.7 1.0
C P:ALA383 3.9 26.4 1.0
N P:ASP386 4.1 26.6 1.0
O P:ALA383 4.1 27.8 1.0
C P:GLY381 4.2 21.7 1.0
N P:GLY382 4.2 21.5 1.0
OD1 P:ASP386 4.3 23.8 1.0
CA P:GLY384 4.3 25.2 1.0
CG P:GLN408 4.3 28.8 1.0
CA P:ALA383 4.3 26.2 1.0
NE2 P:GLN408 4.4 29.4 1.0
N P:ALA383 4.4 24.1 1.0
O P:GLY381 4.5 21.6 1.0
CA P:GLY381 4.5 23.5 1.0
N P:ARG385 4.5 26.5 1.0
CA P:GLY382 4.6 20.9 1.0
CA P:ASP386 4.6 25.8 1.0
CA P:CA1484 4.7 21.7 1.0
CG2 P:ILE411 4.7 29.4 1.0
CA P:ARG385 4.7 30.3 1.0
C P:ARG385 4.8 30.1 1.0
CB P:ASP412 4.8 27.0 1.0
CB P:GLN408 4.9 27.0 1.0

Calcium binding site 7 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 7 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1487

b:20.4
occ:1.00
O P:HOH2339 2.2 21.5 1.0
OD2 P:ASP377 2.3 18.3 1.0
O P:ASP395 2.3 24.1 1.0
OD1 P:ASP402 2.4 16.7 1.0
O P:GLY375 2.4 16.2 1.0
O P:GLY373 2.4 19.5 1.0
CG P:ASP402 3.3 21.1 1.0
CG P:ASP377 3.4 20.4 1.0
C P:ASP395 3.5 24.0 1.0
OD2 P:ASP402 3.5 21.8 1.0
C P:GLY375 3.5 17.4 1.0
C P:GLY373 3.6 20.9 1.0
O P:ALA374 3.8 21.2 1.0
C P:ALA374 3.8 19.3 1.0
N P:ASP377 4.0 16.2 1.0
CB P:ASP377 4.1 16.3 1.0
N P:GLY375 4.1 17.8 1.0
CA P:ASP395 4.1 23.7 1.0
C P:GLY372 4.1 20.1 1.0
CA P:ALA374 4.3 19.8 1.0
N P:GLY373 4.3 21.1 1.0
OD1 P:ASP377 4.3 17.6 1.0
O P:GLY372 4.3 19.4 1.0
CA P:GLY375 4.3 18.4 1.0
N P:ALA374 4.4 18.4 1.0
CB P:ASP395 4.5 22.6 1.0
CA P:GLY372 4.5 19.4 1.0
N P:ALA376 4.5 18.7 1.0
N P:SER396 4.5 22.3 1.0
CA P:GLY373 4.6 18.0 1.0
CA P:CA1483 4.6 18.8 1.0
CB P:ASP402 4.7 19.2 1.0
CA P:ALA376 4.7 18.3 1.0
CA P:SER396 4.7 19.7 1.0
CA P:ASP377 4.7 17.5 1.0
O P:HOH2329 4.8 18.7 1.0
C P:ALA376 4.8 19.6 1.0
CB P:SER396 4.9 20.1 1.0

Reference:

T.Hege, R.E.Feltzer, R.D.Gray, U.Baumann. Crystal Structure of A Complex Between Pseudomonas Aeruginosa Alkaline Protease and Its Cognate Inhibitor: Inhibition By A Zinc-NH2 Coordinative Bond J.Biol.Chem. V. 276 35087 2001.
ISSN: ISSN 0021-9258
PubMed: 11445573
DOI: 10.1074/JBC.M104020200
Page generated: Thu Jul 11 08:45:02 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy