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Calcium in PDB 1go8: The Metzincin'S Methionine: Prtc M226L Mutant

Protein crystallography data

The structure of The Metzincin'S Methionine: Prtc M226L Mutant, PDB code: 1go8 was solved by U.Baumann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.0
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 102.015, 102.015, 121.302, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 19.7

Other elements in 1go8:

The structure of The Metzincin'S Methionine: Prtc M226L Mutant also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the The Metzincin'S Methionine: Prtc M226L Mutant (pdb code 1go8). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the The Metzincin'S Methionine: Prtc M226L Mutant, PDB code: 1go8:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 1 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1480

b:17.4
occ:1.00
O P:GLY299 2.3 17.2 1.0
OD2 P:ASP302 2.3 15.9 1.0
O P:ARG265 2.4 17.9 1.0
O P:GLY267 2.4 18.0 1.0
OG P:SER269 2.4 15.0 1.0
OD1 P:ASP297 2.5 17.8 1.0
OD2 P:ASP297 2.5 16.6 1.0
CG P:ASP297 2.8 20.0 1.0
CG P:ASP302 3.2 17.4 1.0
OD1 P:ASP302 3.4 18.4 1.0
CB P:SER269 3.5 14.1 1.0
C P:ARG265 3.5 16.6 1.0
C P:GLY299 3.5 18.1 1.0
C P:GLY267 3.6 20.8 1.0
N P:SER269 3.8 16.6 1.0
N P:GLY267 4.0 18.7 1.0
C P:THR266 4.1 20.1 1.0
CB P:ARG265 4.2 16.4 1.0
N P:GLY299 4.2 18.3 1.0
CA P:THR266 4.3 17.9 1.0
CA P:SER269 4.3 17.4 1.0
N P:THR266 4.3 19.6 1.0
CB P:ASP297 4.3 18.7 1.0
CA P:GLY300 4.4 16.9 1.0
N P:GLY300 4.4 18.0 1.0
CA P:GLY299 4.5 15.1 1.0
CA P:ARG265 4.5 18.5 1.0
CA P:GLY267 4.5 18.7 1.0
CB P:ASP302 4.5 15.8 1.0
C P:ASP268 4.5 19.6 1.0
O P:THR266 4.5 18.3 1.0
N P:ASP268 4.6 19.4 1.0
O P:HOH2235 4.6 11.1 1.0
CA P:ASP268 4.6 19.2 1.0
C P:GLY300 4.6 18.3 1.0
OH P:TYR271 4.8 16.5 1.0
O P:GLY300 4.9 18.5 1.0

Calcium binding site 2 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 2 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1481

b:18.0
occ:1.00
OD1 P:ASP302 2.3 18.4 1.0
O P:GLY300 2.4 18.5 1.0
O P:THR339 2.4 15.4 1.0
OE1 P:GLU341 2.4 15.7 1.0
O P:HOH2294 2.4 15.9 1.0
OE2 P:GLU341 2.4 16.4 1.0
CD P:GLU341 2.8 17.5 1.0
CG P:ASP302 3.5 17.4 1.0
C P:GLY300 3.5 18.3 1.0
C P:THR339 3.6 18.7 1.0
N P:ASP302 4.2 17.8 1.0
N P:GLY300 4.2 18.0 1.0
CB P:ASP302 4.2 15.8 1.0
C P:GLY299 4.3 18.1 1.0
CB P:THR339 4.3 20.8 1.0
CG P:GLU341 4.3 18.5 1.0
OD2 P:ASP302 4.3 15.9 1.0
O P:GLY299 4.3 17.2 1.0
N P:THR301 4.3 17.7 1.0
CA P:THR301 4.4 19.5 1.0
N P:ILE340 4.4 17.3 1.0
CA P:GLY300 4.5 16.9 1.0
CA P:THR339 4.5 16.8 1.0
O P:HOH2261 4.5 18.2 1.0
CA P:ILE340 4.5 18.9 1.0
OD1 P:ASP297 4.6 17.8 1.0
CG2 P:THR339 4.6 16.9 1.0
C P:THR301 4.7 17.1 1.0
N P:GLU341 4.9 17.7 1.0
O P:HOH2293 4.9 22.4 1.0
N P:THR339 4.9 20.8 1.0
CA P:ASP302 4.9 17.8 1.0
CA P:GLY299 4.9 15.1 1.0
O P:HOH2133 5.0 25.2 1.0

Calcium binding site 3 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 3 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1482

b:22.6
occ:1.00
OD1 P:ASP368 2.3 22.8 1.0
O P:ALA365 2.3 22.2 1.0
O P:GLY346 2.3 20.7 1.0
OD2 P:ASP350 2.4 21.1 1.0
O P:GLY363 2.4 19.8 1.0
O P:GLY348 2.5 23.2 1.0
OD2 P:ASP368 2.8 19.9 1.0
CG P:ASP368 2.9 22.4 1.0
CG P:ASP350 3.3 25.2 1.0
C P:GLY363 3.5 22.2 1.0
C P:GLY346 3.5 19.2 1.0
C P:ALA365 3.6 22.9 1.0
C P:GLY348 3.7 25.6 1.0
C P:GLY364 3.9 21.3 1.0
CB P:ASP350 4.0 22.0 1.0
N P:GLY348 4.0 26.1 1.0
O P:GLY364 4.1 22.8 1.0
OD1 P:ASP350 4.1 23.1 1.0
N P:GLY346 4.1 20.2 1.0
N P:ALA365 4.1 21.3 1.0
C P:SER347 4.1 26.2 1.0
CA P:GLY364 4.2 21.1 1.0
N P:ASP350 4.2 23.1 1.0
N P:GLY364 4.3 20.0 1.0
O P:HOH2301 4.3 22.8 1.0
N P:SER347 4.3 22.0 1.0
CA P:GLY366 4.4 22.1 1.0
CA P:SER347 4.4 23.3 1.0
CB P:ASP368 4.4 19.0 1.0
CA P:GLY346 4.4 19.4 1.0
N P:GLY366 4.4 24.9 1.0
CA P:GLY348 4.5 25.6 1.0
CA P:GLY363 4.5 21.3 1.0
CA P:ALA365 4.5 22.1 1.0
C P:GLY366 4.6 25.9 1.0
C P:GLY345 4.6 20.0 1.0
O P:SER347 4.6 23.6 1.0
O P:GLY366 4.6 23.6 1.0
N P:ASN349 4.7 23.8 1.0
CA P:CA1484 4.7 21.7 1.0
CA P:ASN349 4.8 24.6 1.0
CA P:ASP350 4.8 22.1 1.0
CA P:GLY345 4.9 19.7 1.0
C P:ASN349 5.0 25.1 1.0

Calcium binding site 4 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 4 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1483

b:18.8
occ:1.00
O P:ALA374 2.3 21.2 1.0
O P:ALA357 2.3 18.0 1.0
O P:ASN355 2.3 19.1 1.0
OD1 P:ASN359 2.3 20.5 1.0
O P:GLY372 2.4 19.4 1.0
OD1 P:ASP377 2.4 17.6 1.0
OD2 P:ASP377 2.9 18.3 1.0
CG P:ASP377 3.0 20.4 1.0
CG P:ASN359 3.4 16.7 1.0
C P:ALA374 3.5 19.3 1.0
C P:GLY372 3.5 20.1 1.0
C P:ASN355 3.5 20.7 1.0
C P:ALA357 3.5 19.4 1.0
N P:ASN355 4.0 19.4 1.0
C P:GLY373 4.0 20.9 1.0
N P:ALA357 4.1 20.6 1.0
C P:SER356 4.1 20.4 1.0
N P:ALA374 4.1 18.4 1.0
N P:ASN359 4.2 17.5 1.0
CB P:ASN359 4.2 14.7 1.0
O P:GLY373 4.2 19.5 1.0
ND2 P:ASN359 4.2 13.6 1.0
CA P:GLY372 4.4 19.4 1.0
N P:GLY375 4.4 17.8 1.0
CA P:GLY375 4.4 18.4 1.0
CA P:SER356 4.4 20.9 1.0
N P:SER356 4.4 17.9 1.0
CB P:ASP377 4.4 16.3 1.0
O P:SER356 4.4 20.1 1.0
CA P:ALA357 4.4 21.2 1.0
CA P:ASN355 4.4 20.2 1.0
N P:GLY373 4.5 21.1 1.0
CA P:ALA374 4.5 19.8 1.0
CA P:GLY373 4.5 18.0 1.0
N P:ASP358 4.5 18.2 1.0
OD1 P:ASN355 4.5 19.8 1.0
C P:GLY354 4.6 21.3 1.0
CA P:ASP358 4.6 19.9 1.0
CA P:CA1487 4.6 20.4 1.0
C P:GLY375 4.6 17.4 1.0
O P:GLY375 4.7 16.2 1.0
CA P:GLY354 4.7 21.0 1.0
C P:ASP358 4.8 18.6 1.0
CA P:ASN359 4.8 16.2 1.0

Calcium binding site 5 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 5 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1484

b:21.7
occ:1.00
OD1 P:ASP386 2.3 23.8 1.0
O P:ALA383 2.3 27.8 1.0
O P:GLY381 2.3 21.6 1.0
OD2 P:ASP368 2.4 19.9 1.0
O P:GLY364 2.4 22.8 1.0
O P:GLY366 2.5 23.6 1.0
OD2 P:ASP386 2.7 24.2 1.0
CG P:ASP386 2.9 23.6 1.0
CG P:ASP368 3.4 22.4 1.0
C P:GLY381 3.4 21.7 1.0
C P:ALA383 3.5 26.4 1.0
C P:GLY364 3.6 21.3 1.0
C P:GLY366 3.6 25.9 1.0
C P:ALA365 3.8 22.9 1.0
C P:GLY382 3.8 22.9 1.0
O P:ALA365 3.8 22.2 1.0
O P:GLY382 3.9 23.1 1.0
CA P:GLY382 4.1 20.9 1.0
CB P:ASP368 4.1 19.0 1.0
N P:GLY366 4.1 24.9 1.0
N P:ALA383 4.1 24.1 1.0
N P:ASP368 4.1 22.0 1.0
CA P:ALA365 4.1 22.1 1.0
N P:GLY382 4.2 21.5 1.0
N P:ALA365 4.3 21.3 1.0
CB P:ASP386 4.3 22.1 1.0
N P:GLY384 4.4 26.7 1.0
C P:GLY363 4.4 22.2 1.0
OD1 P:ASP368 4.4 22.8 1.0
CA P:ALA383 4.4 26.2 1.0
N P:GLY364 4.4 20.0 1.0
CA P:GLY384 4.4 25.2 1.0
CA P:GLY381 4.5 23.5 1.0
CA P:GLY366 4.5 22.1 1.0
N P:ASN367 4.5 23.4 1.0
CA P:ASN367 4.6 25.4 1.0
O P:GLY363 4.6 19.8 1.0
CA P:GLY364 4.6 21.1 1.0
CA P:CA1485 4.7 29.3 1.0
C P:GLY384 4.7 28.8 1.0
CA P:CA1482 4.7 22.6 1.0
CA P:GLY363 4.7 21.3 1.0
CA P:ASP368 4.8 21.0 1.0
C P:ASN367 4.8 24.2 1.0
O P:GLY384 4.8 25.1 1.0

Calcium binding site 6 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 6 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1485

b:29.3
occ:1.00
OD2 P:ASP386 2.2 24.2 1.0
OE1 P:GLN408 2.3 27.9 1.0
O P:GLY382 2.4 23.1 1.0
O P:GLY384 2.5 25.1 1.0
OD1 P:ASP412 2.5 25.0 1.0
O P:HOH2346 2.6 21.9 1.0
CG P:ASP386 3.3 23.6 1.0
OD2 P:ASP412 3.4 25.6 1.0
CG P:ASP412 3.4 25.5 1.0
CD P:GLN408 3.5 31.2 1.0
C P:GLY384 3.6 28.8 1.0
C P:GLY382 3.6 22.9 1.0
CB P:ASP386 3.8 22.1 1.0
N P:GLY384 3.9 26.7 1.0
C P:ALA383 3.9 26.4 1.0
N P:ASP386 4.1 26.6 1.0
O P:ALA383 4.1 27.8 1.0
C P:GLY381 4.2 21.7 1.0
N P:GLY382 4.2 21.5 1.0
OD1 P:ASP386 4.3 23.8 1.0
CA P:GLY384 4.3 25.2 1.0
CG P:GLN408 4.3 28.8 1.0
CA P:ALA383 4.3 26.2 1.0
NE2 P:GLN408 4.4 29.4 1.0
N P:ALA383 4.4 24.1 1.0
O P:GLY381 4.5 21.6 1.0
CA P:GLY381 4.5 23.5 1.0
N P:ARG385 4.5 26.5 1.0
CA P:GLY382 4.6 20.9 1.0
CA P:ASP386 4.6 25.8 1.0
CA P:CA1484 4.7 21.7 1.0
CG2 P:ILE411 4.7 29.4 1.0
CA P:ARG385 4.7 30.3 1.0
C P:ARG385 4.8 30.1 1.0
CB P:ASP412 4.8 27.0 1.0
CB P:GLN408 4.9 27.0 1.0

Calcium binding site 7 out of 7 in 1go8

Go back to Calcium Binding Sites List in 1go8
Calcium binding site 7 out of 7 in the The Metzincin'S Methionine: Prtc M226L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of The Metzincin'S Methionine: Prtc M226L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca1487

b:20.4
occ:1.00
O P:HOH2339 2.2 21.5 1.0
OD2 P:ASP377 2.3 18.3 1.0
O P:ASP395 2.3 24.1 1.0
OD1 P:ASP402 2.4 16.7 1.0
O P:GLY375 2.4 16.2 1.0
O P:GLY373 2.4 19.5 1.0
CG P:ASP402 3.3 21.1 1.0
CG P:ASP377 3.4 20.4 1.0
C P:ASP395 3.5 24.0 1.0
OD2 P:ASP402 3.5 21.8 1.0
C P:GLY375 3.5 17.4 1.0
C P:GLY373 3.6 20.9 1.0
O P:ALA374 3.8 21.2 1.0
C P:ALA374 3.8 19.3 1.0
N P:ASP377 4.0 16.2 1.0
CB P:ASP377 4.1 16.3 1.0
N P:GLY375 4.1 17.8 1.0
CA P:ASP395 4.1 23.7 1.0
C P:GLY372 4.1 20.1 1.0
CA P:ALA374 4.3 19.8 1.0
N P:GLY373 4.3 21.1 1.0
OD1 P:ASP377 4.3 17.6 1.0
O P:GLY372 4.3 19.4 1.0
CA P:GLY375 4.3 18.4 1.0
N P:ALA374 4.4 18.4 1.0
CB P:ASP395 4.5 22.6 1.0
CA P:GLY372 4.5 19.4 1.0
N P:ALA376 4.5 18.7 1.0
N P:SER396 4.5 22.3 1.0
CA P:GLY373 4.6 18.0 1.0
CA P:CA1483 4.6 18.8 1.0
CB P:ASP402 4.7 19.2 1.0
CA P:ALA376 4.7 18.3 1.0
CA P:SER396 4.7 19.7 1.0
CA P:ASP377 4.7 17.5 1.0
O P:HOH2329 4.8 18.7 1.0
C P:ALA376 4.8 19.6 1.0
CB P:SER396 4.9 20.1 1.0

Reference:

T.Hege, R.E.Feltzer, R.D.Gray, U.Baumann. Crystal Structure of A Complex Between Pseudomonas Aeruginosa Alkaline Protease and Its Cognate Inhibitor: Inhibition By A Zinc-NH2 Coordinative Bond J.Biol.Chem. V. 276 35087 2001.
ISSN: ISSN 0021-9258
PubMed: 11445573
DOI: 10.1074/JBC.M104020200
Page generated: Sat Dec 12 02:58:08 2020

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