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Calcium in PDB 1h0h: Tungsten Containing Formate Dehydrogenase From Desulfovibrio Gigas

Enzymatic activity of Tungsten Containing Formate Dehydrogenase From Desulfovibrio Gigas

All present enzymatic activity of Tungsten Containing Formate Dehydrogenase From Desulfovibrio Gigas:
1.2.1.2;

Protein crystallography data

The structure of Tungsten Containing Formate Dehydrogenase From Desulfovibrio Gigas, PDB code: 1h0h was solved by H.C.A.Raaijmakers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.408, 110.398, 156.185, 90.00, 93.53, 90.00
R / Rfree (%) 16.7 / 20.1

Other elements in 1h0h:

The structure of Tungsten Containing Formate Dehydrogenase From Desulfovibrio Gigas also contains other interesting chemical elements:

Tungsten (W) 2 atoms
Iron (Fe) 32 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Tungsten Containing Formate Dehydrogenase From Desulfovibrio Gigas (pdb code 1h0h). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Tungsten Containing Formate Dehydrogenase From Desulfovibrio Gigas, PDB code: 1h0h:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1h0h

Go back to Calcium Binding Sites List in 1h0h
Calcium binding site 1 out of 2 in the Tungsten Containing Formate Dehydrogenase From Desulfovibrio Gigas


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Tungsten Containing Formate Dehydrogenase From Desulfovibrio Gigas within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1100

b:18.1
occ:1.00
O A:THR358 2.6 16.5 1.0
O A:LYS363 2.7 15.0 1.0
O A:LEU393 2.7 16.2 1.0
O A:HOH2328 2.7 24.6 1.0
OD1 A:ASN395 2.9 15.7 1.0
O A:LYS360 2.9 16.5 1.0
O A:GLY394 3.2 15.3 1.0
C A:GLY394 3.6 14.6 1.0
C A:LYS363 3.7 15.4 1.0
C A:THR358 3.8 16.0 1.0
C A:LEU393 3.9 15.3 1.0
C A:LYS360 3.9 18.2 1.0
CG A:ASN395 4.0 15.2 1.0
C A:GLY359 4.1 17.9 1.0
O A:HOH2316 4.1 23.3 1.0
CA A:GLY394 4.2 15.5 1.0
CA A:GLY359 4.2 16.7 1.0
N A:ASN395 4.2 13.9 1.0
O A:GLY359 4.3 20.1 1.0
N A:LYS360 4.4 18.2 1.0
CA A:ASN395 4.5 14.2 1.0
N A:GLY394 4.5 15.3 1.0
CA A:ALA364 4.5 15.7 1.0
N A:GLY359 4.5 16.2 1.0
N A:ALA364 4.5 16.5 1.0
N A:LYS363 4.6 17.3 1.0
O A:PRO361 4.6 21.0 1.0
CA A:LYS363 4.7 16.3 1.0
CA A:PRO361 4.7 19.1 1.0
N A:PRO361 4.7 19.6 1.0
C A:PRO361 4.7 19.7 1.0
ND2 A:ASN395 4.8 12.5 1.0
CA A:LYS360 4.8 18.6 1.0
CB A:ASN395 4.9 13.9 1.0
CD2 A:PHE259 4.9 18.1 1.0
CA A:THR358 4.9 15.8 1.0

Calcium binding site 2 out of 2 in 1h0h

Go back to Calcium Binding Sites List in 1h0h
Calcium binding site 2 out of 2 in the Tungsten Containing Formate Dehydrogenase From Desulfovibrio Gigas


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Tungsten Containing Formate Dehydrogenase From Desulfovibrio Gigas within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Ca1100

b:20.0
occ:1.00
O K:THR358 2.6 17.2 1.0
O K:LEU393 2.7 16.3 1.0
O K:LYS363 2.7 15.4 1.0
O K:HOH2287 2.8 24.8 1.0
OD1 K:ASN395 2.8 15.5 1.0
O K:LYS360 2.9 17.6 1.0
O K:GLY394 3.3 15.2 1.0
C K:GLY394 3.7 15.5 1.0
C K:LYS363 3.7 16.3 1.0
C K:THR358 3.8 16.3 1.0
C K:LEU393 3.8 15.4 1.0
CG K:ASN395 3.9 16.0 1.0
C K:LYS360 3.9 18.1 1.0
O K:HOH2275 4.0 28.0 1.0
C K:GLY359 4.0 17.9 1.0
CA K:GLY394 4.2 14.8 1.0
CA K:GLY359 4.2 16.6 1.0
O K:GLY359 4.2 19.3 1.0
N K:ASN395 4.3 13.8 1.0
N K:LYS360 4.3 18.6 1.0
N K:GLY359 4.5 15.7 1.0
N K:GLY394 4.5 15.0 1.0
CA K:ALA364 4.5 15.0 1.0
CA K:ASN395 4.5 14.8 1.0
O K:PRO361 4.5 19.5 1.0
N K:ALA364 4.5 15.1 1.0
N K:LYS363 4.6 16.0 1.0
CA K:PRO361 4.6 18.0 1.0
ND2 K:ASN395 4.6 15.7 1.0
N K:PRO361 4.7 18.5 1.0
C K:PRO361 4.7 18.8 1.0
CA K:LYS363 4.7 16.3 1.0
CA K:LYS360 4.8 19.5 1.0
CB K:ASN395 4.8 15.3 1.0
CA K:THR358 4.9 16.1 1.0
CB K:THR358 5.0 16.2 1.0
CA K:LEU393 5.0 14.6 1.0

Reference:

H.C.A.Raaijmakers, S.Macieira, J.Dias, S.Teixeira, S.Bursakov, R.Huber, J.Moura, I.Moura, M.Romao. Gene Sequence and the 1.8 A Crystal Structure of the Tungsten-Containing Formate Dehydrogenase From Desulfovibrio Gigas Structure V. 10 1261 2002.
ISSN: ISSN 0969-2126
PubMed: 12220497
DOI: 10.1016/S0969-2126(02)00826-2
Page generated: Sat Dec 12 02:58:40 2020

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