Atomistry » Calcium » PDB 1gxr-1h71 » 1h3j
Atomistry »
  Calcium »
    PDB 1gxr-1h71 »
      1h3j »

Calcium in PDB 1h3j: Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A

Enzymatic activity of Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A

All present enzymatic activity of Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A:
1.11.1.7;

Protein crystallography data

The structure of Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A, PDB code: 1h3j was solved by J.F.W.Petersen, K.Houborg, P.Harris, S.Larsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 127.180, 75.530, 76.600, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 25.6

Other elements in 1h3j:

The structure of Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Iron (Fe) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A (pdb code 1h3j). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A, PDB code: 1h3j:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 1h3j

Go back to Calcium Binding Sites List in 1h3j
Calcium binding site 1 out of 4 in the Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:14.5
occ:1.00
O A:HOH593 2.2 10.5 1.0
OD1 A:ASP56 2.3 15.1 1.0
OG A:SER78 2.4 12.3 1.0
O A:ASP56 2.4 12.2 1.0
O A:HOH563 2.5 10.5 1.0
O A:GLY74 2.5 15.7 1.0
OD2 A:ASP76 2.6 13.2 1.0
C A:ASP56 3.3 10.0 1.0
CG A:ASP56 3.3 14.3 1.0
CG A:ASP76 3.6 14.7 1.0
CB A:SER78 3.6 11.6 1.0
C A:GLY74 3.7 14.8 1.0
CA A:ASP56 3.7 10.0 1.0
N A:SER78 4.0 11.8 1.0
OD1 A:ASP76 4.1 15.6 1.0
CB A:ASP56 4.1 11.8 1.0
OD2 A:ASP56 4.1 12.3 1.0
O A:HOH521 4.2 18.1 1.0
N A:ASP76 4.2 15.3 1.0
CA A:SER78 4.4 10.0 1.0
N A:GLY74 4.4 16.7 1.0
N A:ALA57 4.4 9.3 1.0
CA A:GLY74 4.4 15.8 1.0
N A:ILE79 4.5 13.8 1.0
OE2 A:GLU86 4.6 13.4 1.0
O A:GLY59 4.6 14.0 1.0
N A:GLY77 4.6 11.7 1.0
OE1 A:GLU86 4.7 18.1 1.0
N A:ALA75 4.7 15.4 1.0
CB A:ASP76 4.9 14.9 1.0
O A:HIS55 4.9 14.8 1.0
C A:SER78 4.9 13.0 1.0
CB A:SER147 4.9 16.8 1.0
CA A:ALA57 4.9 8.7 1.0
CA A:ASP76 4.9 14.1 1.0
CA A:ALA75 4.9 15.0 1.0

Calcium binding site 2 out of 4 in 1h3j

Go back to Calcium Binding Sites List in 1h3j
Calcium binding site 2 out of 4 in the Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:14.1
occ:1.00
O A:THR203 2.0 10.3 1.0
O A:VAL206 2.4 16.9 1.0
O A:SER184 2.4 12.7 1.0
OG1 A:THR203 2.5 12.2 1.0
OD1 A:ASP208 2.5 20.8 1.0
OD2 A:ASP201 2.6 6.3 1.0
OG A:SER184 2.6 17.1 1.0
OD1 A:ASP201 2.8 8.8 1.0
CG A:ASP201 3.0 7.7 1.0
C A:THR203 3.1 14.1 1.0
C A:SER184 3.4 10.2 1.0
CG A:ASP208 3.5 18.7 1.0
CB A:THR203 3.5 11.8 1.0
C A:VAL206 3.6 16.1 1.0
CB A:SER184 3.7 12.2 1.0
CA A:SER184 3.8 11.0 1.0
CA A:THR203 3.8 13.0 1.0
OD2 A:ASP208 3.8 17.7 1.0
N A:ASP208 4.1 18.2 1.0
N A:PRO204 4.1 16.5 1.0
N A:THR203 4.2 14.2 1.0
N A:VAL206 4.2 14.2 1.0
CA A:VAL206 4.3 14.9 1.0
O A:ASP208 4.4 14.7 1.0
CA A:PRO204 4.5 16.8 1.0
O A:HOH609 4.5 15.7 1.0
CB A:VAL206 4.5 15.2 1.0
CB A:ASP201 4.6 10.2 1.0
N A:PHE207 4.6 14.4 1.0
N A:LEU185 4.6 10.6 1.0
CB A:ASP208 4.7 17.7 1.0
CB A:GLN210 4.7 11.8 1.0
CA A:PHE207 4.7 14.5 1.0
CA A:ASP208 4.7 18.3 1.0
CG2 A:THR203 4.8 15.4 1.0
C A:PRO204 4.9 17.8 1.0
C A:ASP208 4.9 16.6 1.0
C A:PHE207 4.9 17.1 1.0

Calcium binding site 3 out of 4 in 1h3j

Go back to Calcium Binding Sites List in 1h3j
Calcium binding site 3 out of 4 in the Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca402

b:15.0
occ:1.00
O B:HOH554 2.3 10.8 1.0
O B:HOH587 2.3 13.7 1.0
O B:ASP56 2.3 10.4 1.0
OD2 B:ASP56 2.4 15.7 1.0
OG B:SER78 2.5 12.2 1.0
O B:GLY74 2.5 12.3 1.0
OD2 B:ASP76 2.7 18.9 1.0
C B:ASP56 3.2 10.8 1.0
CG B:ASP56 3.3 14.3 1.0
CG B:ASP76 3.6 19.2 1.0
CA B:ASP56 3.7 10.8 1.0
CB B:SER78 3.7 12.3 1.0
C B:GLY74 3.8 13.6 1.0
OD1 B:ASP56 4.0 14.7 1.0
CB B:ASP56 4.1 12.7 1.0
OD1 B:ASP76 4.1 18.8 1.0
N B:SER78 4.1 11.9 1.0
O B:HOH537 4.1 12.2 1.0
N B:ASP76 4.2 15.6 1.0
N B:ALA57 4.4 10.6 1.0
N B:GLY74 4.4 14.7 1.0
CA B:SER78 4.4 12.1 1.0
O B:GLY59 4.5 13.2 1.0
CA B:GLY74 4.5 13.1 1.0
OE2 B:GLU86 4.6 17.1 1.0
N B:ILE79 4.6 13.9 1.0
N B:GLY77 4.6 11.6 1.0
OE1 B:GLU86 4.7 18.7 1.0
CB B:SER147 4.8 15.3 1.0
N B:ALA75 4.8 13.7 1.0
O B:HIS55 4.8 12.3 1.0
CB B:ASP76 4.8 15.8 1.0
CA B:ALA57 4.8 11.3 1.0
CA B:ASP76 4.9 13.7 1.0
CA B:GLY59 4.9 13.6 1.0
C B:SER78 4.9 13.0 1.0
N B:GLY59 5.0 13.3 1.0
N B:ASP56 5.0 11.5 1.0

Calcium binding site 4 out of 4 in 1h3j

Go back to Calcium Binding Sites List in 1h3j
Calcium binding site 4 out of 4 in the Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Recombinant Coprinus Cinereus Peroxidase Determined to 2.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca403

b:11.0
occ:1.00
O B:THR203 2.2 9.8 1.0
O B:SER184 2.3 10.1 1.0
OG B:SER184 2.4 11.8 1.0
OD2 B:ASP201 2.5 6.0 1.0
O B:VAL206 2.5 9.9 1.0
OG1 B:THR203 2.6 12.5 1.0
OD1 B:ASP208 2.6 12.5 1.0
OD1 B:ASP201 2.7 5.5 1.0
CG B:ASP201 3.0 5.0 1.0
C B:THR203 3.2 9.8 1.0
C B:SER184 3.3 9.0 1.0
CB B:THR203 3.5 9.8 1.0
CG B:ASP208 3.5 10.4 1.0
CB B:SER184 3.5 9.9 1.0
CA B:SER184 3.7 8.6 1.0
C B:VAL206 3.7 11.4 1.0
CA B:THR203 3.8 9.6 1.0
OD2 B:ASP208 3.9 13.2 1.0
N B:THR203 4.1 9.6 1.0
N B:ASP208 4.2 12.3 1.0
N B:PRO204 4.2 10.4 1.0
N B:VAL206 4.4 12.2 1.0
O B:HOH643 4.4 7.8 1.0
CA B:VAL206 4.5 11.0 1.0
O B:ASP208 4.5 11.2 1.0
CB B:ASP201 4.5 6.1 1.0
N B:LEU185 4.5 8.0 1.0
CA B:PRO204 4.5 11.9 1.0
CB B:VAL206 4.6 10.1 1.0
N B:PHE207 4.7 9.5 1.0
CB B:GLN210 4.7 9.1 1.0
CB B:ASP208 4.7 10.4 1.0
CA B:PHE207 4.8 9.7 1.0
CA B:ASP208 4.8 12.7 1.0
CG2 B:THR203 4.9 11.8 1.0
C B:PRO204 4.9 13.5 1.0
C B:ASP208 4.9 11.2 1.0
C B:PHE207 4.9 12.2 1.0

Reference:

K.Houborg, P.Harris, J.F.W.Petersen, P.Rowland, J.Poulsen, P.Schneider, J.Vind, S.Larsen. Impact of the Physical and Chemical Environment on the Molecular Structure of Coprinus Cinereus Peroxidase Acta Crystallogr.,Sect.D V. 59 989 2003.
ISSN: ISSN 0907-4449
PubMed: 12777760
DOI: 10.1107/S0907444903006772
Page generated: Sat Dec 12 02:58:45 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy