Calcium in PDB 1h4b: Solution Structure of the Birch Pollen Allergen Bet V 4

The binding sites of Calcium atom in the Solution Structure of the Birch Pollen Allergen Bet V 4 (pdb code 1h4b). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of the Birch Pollen Allergen Bet V 4, PDB code: 1h4b:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Solution Structure of the Birch Pollen Allergen Bet V 4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of the Birch Pollen Allergen Bet V 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1085 b:14.4 occ:1.00 O A:LYS25 2.1 16.7 1.0 OD1 A:ASP23 2.3 16.7 1.0 OD1 A:ASP19 2.3 16.7 1.0 OD1 A:ASN21 2.4 16.7 1.0 OE1 A:GLU30 2.5 16.7 1.0 OE2 A:GLU30 2.5 16.7 1.0 CD A:GLU30 2.8 16.7 1.0 HZ3 A:LYS25 2.9 0.0 1.0 CG A:ASP23 3.1 16.7 1.0 H A:ASP23 3.1 0.0 1.0 HG3 A:LYS25 3.1 0.0 1.0 HA A:ILE26 3.3 0.0 1.0 C A:LYS25 3.3 16.7 1.0 CG A:ASN21 3.4 16.7 1.0 H A:ASN21 3.4 0.0 1.0 OD2 A:ASP23 3.5 16.7 1.0 CG A:ASP19 3.5 16.7 1.0 H A:GLY22 3.5 0.0 1.0 H A:LYS25 3.5 0.0 1.0 HD22 A:ASN21 3.6 0.0 1.0 HA A:ASP19 3.7 0.0 1.0 HG2 A:LYS25 3.8 0.0 1.0 NZ A:LYS25 3.9 50.0 1.0 ND2 A:ASN21 3.9 16.7 1.0 H A:ALA20 3.9 0.0 1.0 CG A:LYS25 3.9 50.0 1.0 HZ1 A:LYS25 4.0 0.0 1.0 OD2 A:ASP19 4.1 16.7 1.0 N A:ASP23 4.1 16.7 1.0 N A:LYS25 4.2 16.7 1.0 CA A:ILE26 4.2 16.7 1.0 N A:ILE26 4.2 16.7 1.0 CA A:LYS25 4.3 16.7 1.0 N A:GLY22 4.3 16.7 1.0 N A:ASN21 4.3 16.7 1.0 CG A:GLU30 4.3 16.7 1.0 CB A:ASP23 4.3 16.7 1.0 H A:SER27 4.4 0.0 1.0 HZ2 A:LYS25 4.4 0.0 1.0 N A:ALA20 4.4 16.7 1.0 CA A:ASP19 4.5 16.7 1.0 H A:GLY24 4.5 0.0 1.0 HB3 A:ASP23 4.5 0.0 1.0 CB A:ASP19 4.6 16.7 1.0 HG12 A:ILE26 4.6 0.0 1.0 CB A:ASN21 4.7 16.7 1.0 CA A:ASP23 4.7 16.7 1.0 C A:ASP19 4.7 16.7 1.0 HG2 A:GLU30 4.8 0.0 1.0 CB A:LYS25 4.8 50.0 1.0 HG3 A:GLU30 4.8 0.0 1.0 HD21 A:ASN21 4.9 0.0 1.0 CE A:LYS25 4.9 50.0 1.0 N A:GLY24 4.9 16.7 1.0 HB2 A:ALA20 4.9 0.0 1.0 HE3 A:LYS25 4.9 0.0 1.0 HB3 A:ASN21 4.9 0.0 1.0 HB3 A:GLU30 4.9 0.0 1.0 CA A:ASN21 4.9 16.7 1.0 N A:SER27 5.0 16.7 1.0 HG22 A:ILE26 5.0 0.0 1.0 HB2 A:GLU30 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the Solution Structure of the Birch Pollen Allergen Bet V 4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of the Birch Pollen Allergen Bet V 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1086 b:13.3 occ:1.00 O A:PHE60 2.1 16.7 1.0 OD1 A:ASP58 2.3 50.0 1.0 OD1 A:ASP54 2.3 16.7 1.0 OD1 A:ASP56 2.4 16.7 1.0 OE1 A:GLU65 2.5 16.7 1.0 OE2 A:GLU65 2.5 16.7 1.0 CD A:GLU65 2.8 16.7 1.0 H A:ASP58 3.2 0.0 1.0 CG A:ASP58 3.3 50.0 1.0 C A:PHE60 3.3 16.7 1.0 HA A:ILE61 3.4 0.0 1.0 H A:GLY57 3.4 0.0 1.0 CG A:ASP54 3.5 16.7 1.0 H A:PHE60 3.5 0.0 1.0 HA A:ASP54 3.5 0.0 1.0 H A:ASP56 3.6 0.0 1.0 CG A:ASP56 3.6 16.7 1.0 HD12 A:ILE61 3.7 0.0 1.0 OD2 A:ASP58 3.9 50.0 1.0 H A:THR55 4.0 0.0 1.0 N A:ASP58 4.1 16.7 1.0 H A:SER62 4.1 0.0 1.0 N A:PHE60 4.2 16.7 1.0 OD2 A:ASP54 4.2 16.7 1.0 N A:ILE61 4.2 16.7 1.0 CA A:ILE61 4.2 16.7 1.0 OD2 A:ASP56 4.2 16.7 1.0 HB2 A:PHE60 4.3 0.0 1.0 CA A:PHE60 4.3 16.7 1.0 CG A:GLU65 4.3 16.7 1.0 N A:GLY57 4.3 16.7 1.0 H A:GLY59 4.3 0.0 1.0 HB3 A:ASP58 4.3 0.0 1.0 CA A:ASP54 4.4 16.7 1.0 CB A:ASP58 4.4 50.0 1.0 N A:ASP56 4.4 16.7 1.0 HG A:SER62 4.5 0.0 1.0 N A:THR55 4.5 16.7 1.0 CB A:ASP54 4.6 16.7 1.0 HB3 A:ASP56 4.6 0.0 1.0 CB A:ASP56 4.6 16.7 1.0 HG3 A:GLU65 4.7 0.0 1.0 CD1 A:ILE61 4.7 16.7 1.0 N A:SER62 4.7 16.7 1.0 OG A:SER62 4.7 16.7 1.0 C A:ASP54 4.7 16.7 1.0 OG1 A:THR55 4.7 50.0 1.0 CA A:ASP58 4.8 16.7 1.0 HD11 A:ILE61 4.8 0.0 1.0 HG2 A:GLU65 4.8 0.0 1.0 N A:GLY59 4.8 16.7 1.0 C A:ILE61 4.8 16.7 1.0 CB A:PHE60 4.9 50.0 1.0 HB2 A:GLU65 5.0 0.0 1.0 CA A:ASP56 5.0 16.7 1.0

P.Neudecker, J.Nerkamp, A.Eisenmann, A.Nourse, T.Lauber, K.Schweimer, K.Lehmann, S.Schwarzinger, F.Ferreira, P.Roesch. Solution Structure, Dynamics, and Hydrodynamics of the Calcium-Bound Cross-Reactive Birch Pollen Allergen Bet V 4 Reveal A Canonical Monomeric Two Ef-Hand Assembly with A Regulatory Function J.Mol.Biol. V. 336 1141 2004.
ISSN: ISSN 0022-2836
PubMed: 15037075
DOI: 10.1016/J.JMB.2003.12.070