Atomistry » Calcium » PDB 1gxr-1h71 » 1h4b
Atomistry »
  Calcium »
    PDB 1gxr-1h71 »
      1h4b »

Calcium in PDB 1h4b: Solution Structure of the Birch Pollen Allergen Bet V 4

Calcium Binding Sites:

The binding sites of Calcium atom in the Solution Structure of the Birch Pollen Allergen Bet V 4 (pdb code 1h4b). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of the Birch Pollen Allergen Bet V 4, PDB code: 1h4b:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1h4b

Go back to Calcium Binding Sites List in 1h4b
Calcium binding site 1 out of 2 in the Solution Structure of the Birch Pollen Allergen Bet V 4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of the Birch Pollen Allergen Bet V 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1085

b:14.4
occ:1.00
O A:LYS25 2.1 16.7 1.0
OD1 A:ASP23 2.3 16.7 1.0
OD1 A:ASP19 2.3 16.7 1.0
OD1 A:ASN21 2.4 16.7 1.0
OE1 A:GLU30 2.5 16.7 1.0
OE2 A:GLU30 2.5 16.7 1.0
CD A:GLU30 2.8 16.7 1.0
HZ3 A:LYS25 2.9 0.0 1.0
CG A:ASP23 3.1 16.7 1.0
H A:ASP23 3.1 0.0 1.0
HG3 A:LYS25 3.1 0.0 1.0
HA A:ILE26 3.3 0.0 1.0
C A:LYS25 3.3 16.7 1.0
CG A:ASN21 3.4 16.7 1.0
H A:ASN21 3.4 0.0 1.0
OD2 A:ASP23 3.5 16.7 1.0
CG A:ASP19 3.5 16.7 1.0
H A:GLY22 3.5 0.0 1.0
H A:LYS25 3.5 0.0 1.0
HD22 A:ASN21 3.6 0.0 1.0
HA A:ASP19 3.7 0.0 1.0
HG2 A:LYS25 3.8 0.0 1.0
NZ A:LYS25 3.9 50.0 1.0
ND2 A:ASN21 3.9 16.7 1.0
H A:ALA20 3.9 0.0 1.0
CG A:LYS25 3.9 50.0 1.0
HZ1 A:LYS25 4.0 0.0 1.0
OD2 A:ASP19 4.1 16.7 1.0
N A:ASP23 4.1 16.7 1.0
N A:LYS25 4.2 16.7 1.0
CA A:ILE26 4.2 16.7 1.0
N A:ILE26 4.2 16.7 1.0
CA A:LYS25 4.3 16.7 1.0
N A:GLY22 4.3 16.7 1.0
N A:ASN21 4.3 16.7 1.0
CG A:GLU30 4.3 16.7 1.0
CB A:ASP23 4.3 16.7 1.0
H A:SER27 4.4 0.0 1.0
HZ2 A:LYS25 4.4 0.0 1.0
N A:ALA20 4.4 16.7 1.0
CA A:ASP19 4.5 16.7 1.0
H A:GLY24 4.5 0.0 1.0
HB3 A:ASP23 4.5 0.0 1.0
CB A:ASP19 4.6 16.7 1.0
HG12 A:ILE26 4.6 0.0 1.0
CB A:ASN21 4.7 16.7 1.0
CA A:ASP23 4.7 16.7 1.0
C A:ASP19 4.7 16.7 1.0
HG2 A:GLU30 4.8 0.0 1.0
CB A:LYS25 4.8 50.0 1.0
HG3 A:GLU30 4.8 0.0 1.0
HD21 A:ASN21 4.9 0.0 1.0
CE A:LYS25 4.9 50.0 1.0
N A:GLY24 4.9 16.7 1.0
HB2 A:ALA20 4.9 0.0 1.0
HE3 A:LYS25 4.9 0.0 1.0
HB3 A:ASN21 4.9 0.0 1.0
HB3 A:GLU30 4.9 0.0 1.0
CA A:ASN21 4.9 16.7 1.0
N A:SER27 5.0 16.7 1.0
HG22 A:ILE26 5.0 0.0 1.0
HB2 A:GLU30 5.0 0.0 1.0

Calcium binding site 2 out of 2 in 1h4b

Go back to Calcium Binding Sites List in 1h4b
Calcium binding site 2 out of 2 in the Solution Structure of the Birch Pollen Allergen Bet V 4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of the Birch Pollen Allergen Bet V 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1086

b:13.3
occ:1.00
O A:PHE60 2.1 16.7 1.0
OD1 A:ASP58 2.3 50.0 1.0
OD1 A:ASP54 2.3 16.7 1.0
OD1 A:ASP56 2.4 16.7 1.0
OE1 A:GLU65 2.5 16.7 1.0
OE2 A:GLU65 2.5 16.7 1.0
CD A:GLU65 2.8 16.7 1.0
H A:ASP58 3.2 0.0 1.0
CG A:ASP58 3.3 50.0 1.0
C A:PHE60 3.3 16.7 1.0
HA A:ILE61 3.4 0.0 1.0
H A:GLY57 3.4 0.0 1.0
CG A:ASP54 3.5 16.7 1.0
H A:PHE60 3.5 0.0 1.0
HA A:ASP54 3.5 0.0 1.0
H A:ASP56 3.6 0.0 1.0
CG A:ASP56 3.6 16.7 1.0
HD12 A:ILE61 3.7 0.0 1.0
OD2 A:ASP58 3.9 50.0 1.0
H A:THR55 4.0 0.0 1.0
N A:ASP58 4.1 16.7 1.0
H A:SER62 4.1 0.0 1.0
N A:PHE60 4.2 16.7 1.0
OD2 A:ASP54 4.2 16.7 1.0
N A:ILE61 4.2 16.7 1.0
CA A:ILE61 4.2 16.7 1.0
OD2 A:ASP56 4.2 16.7 1.0
HB2 A:PHE60 4.3 0.0 1.0
CA A:PHE60 4.3 16.7 1.0
CG A:GLU65 4.3 16.7 1.0
N A:GLY57 4.3 16.7 1.0
H A:GLY59 4.3 0.0 1.0
HB3 A:ASP58 4.3 0.0 1.0
CA A:ASP54 4.4 16.7 1.0
CB A:ASP58 4.4 50.0 1.0
N A:ASP56 4.4 16.7 1.0
HG A:SER62 4.5 0.0 1.0
N A:THR55 4.5 16.7 1.0
CB A:ASP54 4.6 16.7 1.0
HB3 A:ASP56 4.6 0.0 1.0
CB A:ASP56 4.6 16.7 1.0
HG3 A:GLU65 4.7 0.0 1.0
CD1 A:ILE61 4.7 16.7 1.0
N A:SER62 4.7 16.7 1.0
OG A:SER62 4.7 16.7 1.0
C A:ASP54 4.7 16.7 1.0
OG1 A:THR55 4.7 50.0 1.0
CA A:ASP58 4.8 16.7 1.0
HD11 A:ILE61 4.8 0.0 1.0
HG2 A:GLU65 4.8 0.0 1.0
N A:GLY59 4.8 16.7 1.0
C A:ILE61 4.8 16.7 1.0
CB A:PHE60 4.9 50.0 1.0
HB2 A:GLU65 5.0 0.0 1.0
CA A:ASP56 5.0 16.7 1.0

Reference:

P.Neudecker, J.Nerkamp, A.Eisenmann, A.Nourse, T.Lauber, K.Schweimer, K.Lehmann, S.Schwarzinger, F.Ferreira, P.Roesch. Solution Structure, Dynamics, and Hydrodynamics of the Calcium-Bound Cross-Reactive Birch Pollen Allergen Bet V 4 Reveal A Canonical Monomeric Two Ef-Hand Assembly with A Regulatory Function J.Mol.Biol. V. 336 1141 2004.
ISSN: ISSN 0022-2836
PubMed: 15037075
DOI: 10.1016/J.JMB.2003.12.070
Page generated: Thu Jul 11 09:50:55 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy