Atomistry » Calcium » PDB 1h80-1hny » 1hay
Atomistry »
  Calcium »
    PDB 1h80-1hny »
      1hay »

Calcium in PDB 1hay: Snapshots of Serine Protease Catalysis: (B) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase and Human Beta-Casomorphin-7 Jumped to pH 10 For 10 Seconds

Enzymatic activity of Snapshots of Serine Protease Catalysis: (B) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase and Human Beta-Casomorphin-7 Jumped to pH 10 For 10 Seconds

All present enzymatic activity of Snapshots of Serine Protease Catalysis: (B) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase and Human Beta-Casomorphin-7 Jumped to pH 10 For 10 Seconds:
3.4.21.11;

Protein crystallography data

The structure of Snapshots of Serine Protease Catalysis: (B) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase and Human Beta-Casomorphin-7 Jumped to pH 10 For 10 Seconds, PDB code: 1hay was solved by R.C.Wilmouth, K.Edman, R.Neutze, P.A.Wright, I.J.Clifton, T.R.Schneider, C.J.Schofield, J.Hajdu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.0 / 1.7
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.740, 57.870, 73.470, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 21.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Snapshots of Serine Protease Catalysis: (B) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase and Human Beta-Casomorphin-7 Jumped to pH 10 For 10 Seconds (pdb code 1hay). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Snapshots of Serine Protease Catalysis: (B) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase and Human Beta-Casomorphin-7 Jumped to pH 10 For 10 Seconds, PDB code: 1hay:

Calcium binding site 1 out of 1 in 1hay

Go back to Calcium Binding Sites List in 1hay
Calcium binding site 1 out of 1 in the Snapshots of Serine Protease Catalysis: (B) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase and Human Beta-Casomorphin-7 Jumped to pH 10 For 10 Seconds


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Snapshots of Serine Protease Catalysis: (B) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase and Human Beta-Casomorphin-7 Jumped to pH 10 For 10 Seconds within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1246

b:16.8
occ:1.00
 O B:ASN72 2.4 14.5 1.0
O B:GLN75 2.5 19.8 1.0
OE1 B:GLU80 2.5 16.0 1.0
OE1 B:GLU70 2.5 19.5 1.0
OD1 B:ASN77 2.6 19.2 1.0
O B:HOH2036 2.7 27.8 1.0
OE2 B:GLU70 3.1 23.1 1.0
CD B:GLU70 3.1 18.7 1.0
CD B:GLU80 3.5 15.6 1.0
C B:ASN72 3.5 15.7 1.0
CG B:ASN77 3.6 17.9 1.0
C B:GLN75 3.6 22.8 1.0
N B:ASN77 3.8 18.9 1.0
CG B:GLU80 3.9 15.3 1.0
N B:ASN72 4.0 14.2 1.0
CB B:ASN77 4.1 18.7 1.0
CA B:ASN76 4.2 20.8 1.0
CA B:ASN72 4.3 15.4 1.0
C B:ASN76 4.3 20.3 1.0
N B:ASN76 4.4 21.3 1.0
N B:GLN75 4.4 24.8 1.0
N B:LEU73 4.5 15.8 1.0
CB B:ASN72 4.5 17.5 1.0
ND2 B:ASN77 4.6 19.6 1.0
CG B:GLU70 4.6 16.1 1.0
OE2 B:GLU80 4.6 15.5 1.0
CA B:ASN77 4.6 18.3 1.0
N B:HIS71 4.6 12.8 1.0
CA B:GLN75 4.7 24.7 1.0
CA B:LEU73 4.7 18.6 1.0
C B:LEU73 4.8 19.8 1.0
O B:HOH2042 4.9 39.8 1.0
O B:HOH2032 4.9 21.3 1.0

Reference:

R.C.Wilmouth, K.Edman, R.Neutze, P.A.Wright, I.J.Clifton, T.R.Schneider, C.J.Schofield, J.Hajdu. X-Ray Snapshots of Serine Protease Catalysis Reveal A Tetrahedral Intermediate Nat.Struct.Biol. V. 8 689 2001.
ISSN: ISSN 1072-8368
PubMed: 11473259
DOI: 10.1038/90401
Page generated: Thu Jul 11 10:00:00 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy