Atomistry » Calcium » PDB 1h80-1hny » 1hm2
Atomistry »
  Calcium »
    PDB 1h80-1hny »
      1hm2 »

Calcium in PDB 1hm2: Active Site of Chondroitinase Ac Lyase Revealed By the Structure of Enzyme-Oligosaccharide Complexes and Mutagenesis

Enzymatic activity of Active Site of Chondroitinase Ac Lyase Revealed By the Structure of Enzyme-Oligosaccharide Complexes and Mutagenesis

All present enzymatic activity of Active Site of Chondroitinase Ac Lyase Revealed By the Structure of Enzyme-Oligosaccharide Complexes and Mutagenesis:
4.2.2.5;

Protein crystallography data

The structure of Active Site of Chondroitinase Ac Lyase Revealed By the Structure of Enzyme-Oligosaccharide Complexes and Mutagenesis, PDB code: 1hm2 was solved by W.Huang, L.Boju, L.Tkalec, H.Su, H.O.Yang, N.S.Gunay, R.J.Linhardt, Y.S.Kim, A.Matte, M.Cygler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.900, 86.900, 192.300, 90.00, 90.00, 90.00
R / Rfree (%) 23.3 / 27

Calcium Binding Sites:

The binding sites of Calcium atom in the Active Site of Chondroitinase Ac Lyase Revealed By the Structure of Enzyme-Oligosaccharide Complexes and Mutagenesis (pdb code 1hm2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Active Site of Chondroitinase Ac Lyase Revealed By the Structure of Enzyme-Oligosaccharide Complexes and Mutagenesis, PDB code: 1hm2:

Calcium binding site 1 out of 1 in 1hm2

Go back to Calcium Binding Sites List in 1hm2
Calcium binding site 1 out of 1 in the Active Site of Chondroitinase Ac Lyase Revealed By the Structure of Enzyme-Oligosaccharide Complexes and Mutagenesis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Active Site of Chondroitinase Ac Lyase Revealed By the Structure of Enzyme-Oligosaccharide Complexes and Mutagenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1801

b:23.7
occ:1.00
 OE2 A:GLU405 2.2 25.4 1.0
OD2 A:ASP407 2.2 23.5 1.0
OD1 A:ASP416 2.3 27.0 1.0
O A:HOH874 2.4 35.6 1.0
O A:TYR417 2.4 28.8 1.0
OD1 A:ASP407 2.5 22.4 1.0
O A:HOH895 2.6 29.2 1.0
CG A:ASP407 2.7 22.1 1.0
CD A:GLU405 3.3 24.2 1.0
CG A:ASP416 3.5 26.3 1.0
C A:TYR417 3.6 29.4 1.0
N A:TYR417 3.7 27.7 1.0
CG A:GLU405 3.7 24.9 1.0
C A:ASP416 3.9 27.4 1.0
NZ A:LYS408 3.9 22.3 1.0
CA A:ASP416 4.1 26.2 1.0
CB A:ASP407 4.2 22.8 1.0
O A:HOH800 4.2 23.0 1.0
CA A:TYR417 4.2 28.4 1.0
OD2 A:ASP416 4.3 27.8 1.0
O A:LEU418 4.3 31.2 1.0
OE1 A:GLU405 4.4 24.1 1.0
CB A:ASP416 4.4 27.0 1.0
O A:ASP416 4.4 27.4 1.0
O A:HOH858 4.5 28.8 1.0
OD1 A:ASP420 4.5 28.4 1.0
N A:LEU418 4.7 30.6 1.0
C A:LEU418 4.7 31.1 1.0
CB A:TYR417 4.8 28.4 1.0
CA A:LEU418 5.0 31.0 1.0

Reference:

W.Huang, L.Boju, L.Tkalec, H.Su, H.O.Yang, N.S.Gunay, R.J.Linhardt, Y.S.Kim, A.Matte, M.Cygler. Active Site of Chondroitin Ac Lyase Revealed By the Structure of Enzyme-Oligosaccharide Complexes and Mutagenesis. Biochemistry V. 40 2359 2001.
ISSN: ISSN 0006-2960
PubMed: 11327856
DOI: 10.1021/BI0024254
Page generated: Thu Jul 11 10:04:43 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy