Atomistry » Calcium » PDB 1hov-1i6t » 1i0u
Atomistry »
  Calcium »
    PDB 1hov-1i6t »
      1i0u »

Calcium in PDB 1i0u: Solution Structure and Backbone Dynamics of A Concatemer of Egf-Homology Modules of the Human Low Density Lipoprotein Receptor

Calcium Binding Sites:

The binding sites of Calcium atom in the Solution Structure and Backbone Dynamics of A Concatemer of Egf-Homology Modules of the Human Low Density Lipoprotein Receptor (pdb code 1i0u). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure and Backbone Dynamics of A Concatemer of Egf-Homology Modules of the Human Low Density Lipoprotein Receptor, PDB code: 1i0u:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1i0u

Go back to Calcium Binding Sites List in 1i0u
Calcium binding site 1 out of 2 in the Solution Structure and Backbone Dynamics of A Concatemer of Egf-Homology Modules of the Human Low Density Lipoprotein Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure and Backbone Dynamics of A Concatemer of Egf-Homology Modules of the Human Low Density Lipoprotein Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca83

b:30.0
occ:1.00
H A:GLU4 2.4 30.0 1.0
HA A:ASN3 2.4 30.0 1.0
HB2 A:ASP18 2.4 30.0 1.0
OE1 A:GLU4 2.7 30.0 1.0
OD1 A:ASP18 2.7 30.0 1.0
OE2 A:GLU4 2.7 30.0 1.0
O A:THR2 2.8 30.0 1.0
CD A:GLU4 2.9 30.0 1.0
N A:GLU4 3.2 30.0 1.0
CB A:ASP18 3.3 30.0 1.0
CG A:ASP18 3.3 30.0 1.0
CA A:ASN3 3.4 30.0 1.0
H A:CYS5 3.6 30.0 1.0
HA A:ASP18 3.7 30.0 1.0
C A:ASN3 3.7 30.0 1.0
C A:THR2 3.7 30.0 1.0
N A:ASN3 4.0 30.0 1.0
HB2 A:CYS16 4.0 30.0 1.0
HB2 A:GLU4 4.0 30.0 1.0
OD1 A:ASN3 4.0 30.0 1.0
CA A:ASP18 4.1 30.0 1.0
HB3 A:ASP18 4.1 30.0 1.0
SG A:CYS5 4.2 30.0 1.0
CG A:GLU4 4.2 30.0 1.0
CA A:GLU4 4.3 30.0 1.0
CB A:GLU4 4.3 30.0 1.0
H A:ASP18 4.4 30.0 1.0
N A:CYS5 4.4 30.0 1.0
OD2 A:ASP18 4.5 30.0 1.0
HG23 A:THR2 4.5 30.0 1.0
CB A:ASN3 4.5 30.0 1.0
N A:ASP18 4.5 30.0 1.0
O A:CYS16 4.7 30.0 1.0
HG3 A:GLU4 4.7 30.0 1.0
H A:GLY1 4.7 30.0 1.0
CG A:ASN3 4.7 30.0 1.0
HB2 A:ASN3 4.8 30.0 1.0
C A:GLU4 4.8 30.0 1.0
O A:ASN3 4.9 30.0 1.0
HD1 A:TYR23 4.9 30.0 1.0
H A:ASN3 4.9 30.0 1.0
CD1 A:TYR23 4.9 30.0 1.0
HG2 A:GLU4 4.9 30.0 1.0

Calcium binding site 2 out of 2 in 1i0u

Go back to Calcium Binding Sites List in 1i0u
Calcium binding site 2 out of 2 in the Solution Structure and Backbone Dynamics of A Concatemer of Egf-Homology Modules of the Human Low Density Lipoprotein Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure and Backbone Dynamics of A Concatemer of Egf-Homology Modules of the Human Low Density Lipoprotein Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca84

b:30.0
occ:1.00
OD1 A:ASN57 2.7 30.0 1.0
O A:ILE42 2.7 30.0 1.0
OE1 A:GLU44 2.7 30.0 1.0
OD2 A:ASP41 2.7 30.0 1.0
OE2 A:GLU44 2.8 30.0 1.0
H A:GLY60 2.8 30.0 1.0
O A:LEU58 2.8 30.0 1.0
CD A:GLU44 3.1 30.0 1.0
HB3 A:ASP41 3.1 30.0 1.0
HD22 A:ASN57 3.1 30.0 1.0
HA2 A:GLY60 3.4 30.0 1.0
HA A:ASP43 3.4 30.0 1.0
CG A:ASN57 3.6 30.0 1.0
N A:GLY60 3.6 30.0 1.0
CG A:ASP41 3.7 30.0 1.0
ND2 A:ASN57 3.7 30.0 1.0
H A:GLU44 3.7 30.0 1.0
H A:LEU58 3.8 30.0 1.0
CB A:ASP41 3.9 30.0 1.0
C A:ILE42 3.9 30.0 1.0
C A:LEU58 4.0 30.0 1.0
HB3 A:TYR62 4.0 30.0 1.0
CA A:GLY60 4.1 30.0 1.0
HA A:GLU59 4.2 30.0 1.0
HZ A:PHE31 4.2 30.0 1.0
HD1 A:TYR62 4.2 30.0 1.0
CA A:ASP43 4.4 30.0 1.0
C A:ASP41 4.5 30.0 1.0
N A:LEU58 4.6 30.0 1.0
CG A:GLU44 4.6 30.0 1.0
HB2 A:ASP41 4.6 30.0 1.0
O A:ASP41 4.6 30.0 1.0
N A:GLU44 4.6 30.0 1.0
N A:ILE42 4.6 30.0 1.0
HG21 A:ILE42 4.6 30.0 1.0
CZ A:PHE31 4.6 30.0 1.0
N A:ASP43 4.6 30.0 1.0
HD21 A:ASN57 4.7 30.0 1.0
C A:GLU59 4.7 30.0 1.0
H A:TYR62 4.8 30.0 1.0
HA3 A:GLY60 4.8 30.0 1.0
CA A:ASP41 4.8 30.0 1.0
CA A:GLU59 4.8 30.0 1.0
OD1 A:ASP41 4.8 30.0 1.0
N A:GLU59 4.9 30.0 1.0
H A:ILE42 4.9 30.0 1.0
HE2 A:PHE31 4.9 30.0 1.0
CD1 A:TYR62 4.9 30.0 1.0
CA A:LEU58 4.9 30.0 1.0
HG22 A:ILE42 4.9 30.0 1.0
HG2 A:GLU44 5.0 30.0 1.0
CA A:ILE42 5.0 30.0 1.0
H A:ASP41 5.0 30.0 1.0

Reference:

N.D.Kurniawan, K.Aliabadizadeh, I.M.Brereton, P.A.Kroon, R.Smith. uc(Nmr) Structure and Backbone Dynamics of A Concatemer of Epidermal Growth Factor Homology Modules of the Human Low-Density Lipoprotein Receptor. J.Mol.Biol. V. 311 341 2001.
ISSN: ISSN 0022-2836
PubMed: 11478865
DOI: 10.1006/JMBI.2001.4867
Page generated: Mon Jul 7 15:44:48 2025

Last articles

Ca in 3FXP
Ca in 3FXS
Ca in 3FYB
Ca in 3FYE
Ca in 3FVP
Ca in 3FW0
Ca in 3FVZ
Ca in 3FS7
Ca in 3FVQ
Ca in 3FVJ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy