Calcium in PDB 1j0m: Crystal Structure of Bacillus Sp. GL1 Xanthan Lyase That Acts on Side Chains of Xanthan

All present enzymatic activity of Crystal Structure of Bacillus Sp. GL1 Xanthan Lyase That Acts on Side Chains of Xanthan:
4.2.2.12;

The structure of Crystal Structure of Bacillus Sp. GL1 Xanthan Lyase That Acts on Side Chains of Xanthan, PDB code: 1j0m was solved by W.Hashimoto, H.Nankai, B.Mikami, K.Murata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.31 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	54.323, 91.446, 160.745, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 24

The binding sites of Calcium atom in the Crystal Structure of Bacillus Sp. GL1 Xanthan Lyase That Acts on Side Chains of Xanthan (pdb code 1j0m). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Bacillus Sp. GL1 Xanthan Lyase That Acts on Side Chains of Xanthan, PDB code: 1j0m:

Calcium binding site 1 out of 1 in the Crystal Structure of Bacillus Sp. GL1 Xanthan Lyase That Acts on Side Chains of Xanthan


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Bacillus Sp. GL1 Xanthan Lyase That Acts on Side Chains of Xanthan within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca779 b:0.7 occ:1.00 O A:HOH951 1.8 27.9 1.0 OE2 A:GLU517 2.0 27.4 1.0 OE1 A:GLU517 2.2 28.4 1.0 CD A:GLU517 2.3 30.8 1.0 OD1 A:ASP516 2.4 44.2 1.0 OE1 A:GLU677 2.7 12.8 1.0 O A:HOH1065 3.0 27.8 1.0 OD1 A:ASP515 3.1 21.6 1.0 CG A:ASP516 3.4 21.8 1.0 CG A:GLU517 3.8 25.7 1.0 CD A:GLU677 3.8 13.8 1.0 OD2 A:ASP516 3.9 23.5 1.0 CG A:ASP515 3.9 19.1 1.0 CB A:ALA661 4.0 16.1 1.0 OD2 A:ASP515 4.1 20.0 1.0 N A:ASP516 4.2 20.3 1.0 CG A:GLU677 4.3 9.6 1.0 CB A:GLU517 4.4 11.5 1.0 N A:GLU517 4.4 21.2 1.0 CE1 A:TYR656 4.6 18.3 1.0 OH A:TYR656 4.6 25.4 1.0 CB A:ASP516 4.6 18.2 1.0 C A:ASP516 4.7 22.8 1.0 CA A:ASP516 4.7 20.6 1.0 CD1 A:ILE662 4.9 12.8 1.0 OE2 A:GLU677 4.9 12.9 1.0 CD2 A:LEU679 4.9 29.6 1.0 OG1 A:THR678 4.9 34.2 1.0 CB A:PHE514 5.0 20.1 1.0

W.Hashimoto, H.Nankai, B.Mikami, K.Murata. Crystal Structure of Bacillus Sp. GL1 Xanthan Lyase, Which Acts on the Side Chains of Xanthan. J.Biol.Chem. V. 278 7663 2003.
ISSN: ISSN 0021-9258
PubMed: 12475987
DOI: 10.1074/JBC.M208100200