Calcium in PDB 1jc2: Complex of the C-Domain of Troponin C with Residues 1-40 of Troponin I
Calcium Binding Sites:
The binding sites of Calcium atom in the Complex of the C-Domain of Troponin C with Residues 1-40 of Troponin I
(pdb code 1jc2). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Complex of the C-Domain of Troponin C with Residues 1-40 of Troponin I, PDB code: 1jc2:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 1jc2
Go back to
Calcium Binding Sites List in 1jc2
Calcium binding site 1 out
of 2 in the Complex of the C-Domain of Troponin C with Residues 1-40 of Troponin I
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Complex of the C-Domain of Troponin C with Residues 1-40 of Troponin I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2
b:0.0
occ:1.00
|
HD22
|
A:ASN108
|
1.9
|
0.0
|
1.0
|
HB3
|
A:ASP110
|
2.2
|
0.0
|
1.0
|
OD1
|
A:ASP106
|
2.4
|
0.0
|
1.0
|
ND2
|
A:ASN108
|
2.5
|
0.0
|
1.0
|
OE2
|
A:GLU117
|
2.5
|
0.0
|
1.0
|
OE1
|
A:GLU117
|
2.6
|
0.0
|
1.0
|
CD
|
A:GLU117
|
2.6
|
0.0
|
1.0
|
HA
|
A:ASP106
|
2.7
|
0.0
|
1.0
|
HD21
|
A:ASN108
|
2.7
|
0.0
|
1.0
|
OD2
|
A:ASP110
|
2.8
|
0.0
|
1.0
|
CB
|
A:ASP110
|
2.9
|
0.0
|
1.0
|
O
|
A:PHE112
|
3.0
|
0.0
|
1.0
|
CG
|
A:ASP106
|
3.0
|
0.0
|
1.0
|
HB2
|
A:ASP110
|
3.0
|
0.0
|
1.0
|
CG
|
A:ASP110
|
3.2
|
0.0
|
1.0
|
OD2
|
A:ASP106
|
3.5
|
0.0
|
1.0
|
H
|
A:ASN108
|
3.6
|
0.0
|
1.0
|
CG
|
A:ASN108
|
3.6
|
0.0
|
1.0
|
HG3
|
A:GLU117
|
3.6
|
0.0
|
1.0
|
CA
|
A:ASP106
|
3.6
|
0.0
|
1.0
|
CG
|
A:GLU117
|
3.7
|
0.0
|
1.0
|
H
|
A:PHE112
|
3.7
|
0.0
|
1.0
|
HA
|
A:ILE113
|
3.8
|
0.0
|
1.0
|
O
|
A:ASN108
|
3.8
|
0.0
|
1.0
|
CB
|
A:ASP106
|
3.9
|
0.0
|
1.0
|
OD2
|
A:ASP114
|
3.9
|
0.0
|
1.0
|
OD1
|
A:ASN108
|
4.0
|
0.0
|
1.0
|
C
|
A:PHE112
|
4.1
|
0.0
|
1.0
|
H
|
A:LYS107
|
4.1
|
0.0
|
1.0
|
H
|
A:ASP114
|
4.1
|
0.0
|
1.0
|
CA
|
A:ASP110
|
4.3
|
0.0
|
1.0
|
HB2
|
A:ASP106
|
4.3
|
0.0
|
1.0
|
C
|
A:ASP106
|
4.3
|
0.0
|
1.0
|
HG2
|
A:GLU117
|
4.4
|
0.0
|
1.0
|
OD1
|
A:ASP110
|
4.4
|
0.0
|
1.0
|
H
|
A:GLY111
|
4.4
|
0.0
|
1.0
|
N
|
A:ASN108
|
4.5
|
0.0
|
1.0
|
N
|
A:LYS107
|
4.5
|
0.0
|
1.0
|
H
|
A:ASP110
|
4.5
|
0.0
|
1.0
|
N
|
A:PHE112
|
4.6
|
0.0
|
1.0
|
N
|
A:ASP110
|
4.6
|
0.0
|
1.0
|
CA
|
A:ILE113
|
4.7
|
0.0
|
1.0
|
C
|
A:ASN108
|
4.7
|
0.0
|
1.0
|
N
|
A:ASP106
|
4.8
|
0.0
|
1.0
|
N
|
A:GLY111
|
4.8
|
0.0
|
1.0
|
C
|
A:ASP110
|
4.8
|
0.0
|
1.0
|
HB2
|
A:GLU117
|
4.8
|
0.0
|
1.0
|
HB3
|
A:ASP106
|
4.8
|
0.0
|
1.0
|
CB
|
A:GLU117
|
4.8
|
0.0
|
1.0
|
CB
|
A:ASN108
|
4.8
|
0.0
|
1.0
|
N
|
A:ILE113
|
4.8
|
0.0
|
1.0
|
CG
|
A:ASP114
|
4.9
|
0.0
|
1.0
|
O
|
A:PHE105
|
5.0
|
0.0
|
1.0
|
CA
|
A:ASN108
|
5.0
|
0.0
|
1.0
|
N
|
A:ASP114
|
5.0
|
0.0
|
1.0
|
CA
|
A:PHE112
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 2 out
of 2 in 1jc2
Go back to
Calcium Binding Sites List in 1jc2
Calcium binding site 2 out
of 2 in the Complex of the C-Domain of Troponin C with Residues 1-40 of Troponin I
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Complex of the C-Domain of Troponin C with Residues 1-40 of Troponin I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca3
b:0.0
occ:1.00
|
OD2
|
A:ASP146
|
2.0
|
0.0
|
1.0
|
OE1
|
A:GLU153
|
2.1
|
0.0
|
1.0
|
HA
|
A:ASP142
|
2.3
|
0.0
|
1.0
|
OD1
|
A:ASP146
|
2.4
|
0.0
|
1.0
|
CG
|
A:ASP146
|
2.4
|
0.0
|
1.0
|
OE2
|
A:GLU153
|
2.7
|
0.0
|
1.0
|
CD
|
A:GLU153
|
2.7
|
0.0
|
1.0
|
HD21
|
A:ASN144
|
2.8
|
0.0
|
1.0
|
OD1
|
A:ASP142
|
2.8
|
0.0
|
1.0
|
O
|
A:ARG148
|
2.8
|
0.0
|
1.0
|
H
|
A:ASN144
|
2.8
|
0.0
|
1.0
|
H
|
A:LYS143
|
3.0
|
0.0
|
1.0
|
H
|
A:ASP146
|
3.1
|
0.0
|
1.0
|
CA
|
A:ASP142
|
3.3
|
0.0
|
1.0
|
HB2
|
A:ASN144
|
3.5
|
0.0
|
1.0
|
N
|
A:LYS143
|
3.5
|
0.0
|
1.0
|
CG
|
A:ASP142
|
3.6
|
0.0
|
1.0
|
H
|
A:ARG148
|
3.6
|
0.0
|
1.0
|
ND2
|
A:ASN144
|
3.7
|
0.0
|
1.0
|
C
|
A:ASP142
|
3.8
|
0.0
|
1.0
|
N
|
A:ASN144
|
3.8
|
0.0
|
1.0
|
CB
|
A:ASP146
|
3.8
|
0.0
|
1.0
|
HA
|
A:ILE149
|
3.8
|
0.0
|
1.0
|
C
|
A:ARG148
|
3.9
|
0.0
|
1.0
|
CB
|
A:ASP142
|
4.0
|
0.0
|
1.0
|
N
|
A:ASP146
|
4.0
|
0.0
|
1.0
|
HB3
|
A:ASP146
|
4.0
|
0.0
|
1.0
|
H
|
A:ASP150
|
4.1
|
0.0
|
1.0
|
CG
|
A:GLU153
|
4.2
|
0.0
|
1.0
|
HB2
|
A:ASP142
|
4.3
|
0.0
|
1.0
|
CB
|
A:ASN144
|
4.3
|
0.0
|
1.0
|
HD22
|
A:ASN144
|
4.3
|
0.0
|
1.0
|
H
|
A:ASN145
|
4.3
|
0.0
|
1.0
|
N
|
A:ASP142
|
4.4
|
0.0
|
1.0
|
CG
|
A:ASN144
|
4.5
|
0.0
|
1.0
|
CA
|
A:ASP146
|
4.5
|
0.0
|
1.0
|
HG2
|
A:GLU153
|
4.5
|
0.0
|
1.0
|
N
|
A:ARG148
|
4.5
|
0.0
|
1.0
|
CA
|
A:ASN144
|
4.5
|
0.0
|
1.0
|
HB2
|
A:ASP146
|
4.5
|
0.0
|
1.0
|
N
|
A:ASN145
|
4.5
|
0.0
|
1.0
|
OD2
|
A:ASP142
|
4.6
|
0.0
|
1.0
|
C
|
A:ASN144
|
4.6
|
0.0
|
1.0
|
HB2
|
A:GLU153
|
4.6
|
0.0
|
1.0
|
OD1
|
A:ASP150
|
4.6
|
0.0
|
1.0
|
CA
|
A:ILE149
|
4.6
|
0.0
|
1.0
|
O
|
A:SER141
|
4.7
|
0.0
|
1.0
|
CA
|
A:LYS143
|
4.7
|
0.0
|
1.0
|
C
|
A:LYS143
|
4.7
|
0.0
|
1.0
|
N
|
A:ILE149
|
4.7
|
0.0
|
1.0
|
HB3
|
A:ASP150
|
4.8
|
0.0
|
1.0
|
HG3
|
A:GLU153
|
4.8
|
0.0
|
1.0
|
HB3
|
A:GLU153
|
4.8
|
0.0
|
1.0
|
CA
|
A:ARG148
|
4.8
|
0.0
|
1.0
|
CB
|
A:GLU153
|
4.8
|
0.0
|
1.0
|
O
|
A:ASP142
|
4.8
|
0.0
|
1.0
|
HB2
|
A:ARG148
|
4.8
|
0.0
|
1.0
|
N
|
A:ASP150
|
4.8
|
0.0
|
1.0
|
C
|
A:ASP146
|
4.8
|
0.0
|
1.0
|
H
|
A:GLY147
|
4.9
|
0.0
|
1.0
|
C
|
A:SER141
|
4.9
|
0.0
|
1.0
|
H
|
A:ASP142
|
4.9
|
0.0
|
1.0
|
HB3
|
A:ASP142
|
4.9
|
0.0
|
1.0
|
HB2
|
A:LYS143
|
5.0
|
0.0
|
1.0
|
|
Reference:
P.Mercier,
L.Spyracopoulos,
B.D.Sykes.
Structure, Dynamics, and Thermodynamics of the Structural Domain of Troponin C in Complex with the Regulatory Peptide 1-40 of Troponin I Biochemistry V. 40 10063 2001.
ISSN: ISSN 0006-2960
PubMed: 11513585
DOI: 10.1021/BI010748+
Page generated: Thu Jul 11 10:41:53 2024
|