Atomistry » Calcium » PDB 1j1t-1jee » 1jee
Atomistry »
  Calcium »
    PDB 1j1t-1jee »
      1jee »

Calcium in PDB 1jee: Crystal Structure of Atp Sulfurylase in Complex with Chlorate

Enzymatic activity of Crystal Structure of Atp Sulfurylase in Complex with Chlorate

All present enzymatic activity of Crystal Structure of Atp Sulfurylase in Complex with Chlorate:
2.7.7.4;

Protein crystallography data

The structure of Crystal Structure of Atp Sulfurylase in Complex with Chlorate, PDB code: 1jee was solved by T.C.Ullrich, R.Huber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.87 / 2.80
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 185.940, 185.940, 223.812, 90.00, 90.00, 120.00
R / Rfree (%) 18.4 / 23.2

Other elements in 1jee:

The structure of Crystal Structure of Atp Sulfurylase in Complex with Chlorate also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Cadmium (Cd) 11 atoms
Chlorine (Cl) 2 atoms
Sodium (Na) 12 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Atp Sulfurylase in Complex with Chlorate (pdb code 1jee). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Crystal Structure of Atp Sulfurylase in Complex with Chlorate, PDB code: 1jee:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 1jee

Go back to Calcium Binding Sites List in 1jee
Calcium binding site 1 out of 6 in the Crystal Structure of Atp Sulfurylase in Complex with Chlorate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Atp Sulfurylase in Complex with Chlorate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca517

b:32.0
occ:1.00
 OD1 A:ASP151 2.0 37.5 1.0
O A:HOH935 2.2 37.5 1.0
OD2 A:ASP151 2.5 39.3 1.0
CG A:ASP151 2.5 37.6 1.0
O A:HOH1009 3.6 41.8 1.0
CB A:ASP151 4.0 35.3 1.0
O A:HOH850 4.4 20.2 1.0
NZ A:LYS125 4.8 29.4 1.0
O A:PHE146 4.8 35.6 1.0
CA A:ASP151 5.0 35.2 1.0

Calcium binding site 2 out of 6 in 1jee

Go back to Calcium Binding Sites List in 1jee
Calcium binding site 2 out of 6 in the Crystal Structure of Atp Sulfurylase in Complex with Chlorate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Atp Sulfurylase in Complex with Chlorate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca519

b:68.6
occ:1.00
 OD1 A:ASP303 2.4 36.0 1.0
CG A:ASP303 3.2 37.4 1.0
OD2 A:ASP303 3.4 39.7 1.0
NZ A:LYS297 3.6 40.3 1.0
CB A:ASP303 4.6 36.9 1.0
CD A:PRO307 4.7 26.5 1.0
NH2 A:ARG290 4.7 56.3 1.0
CE A:LYS297 4.9 40.6 1.0

Calcium binding site 3 out of 6 in 1jee

Go back to Calcium Binding Sites List in 1jee
Calcium binding site 3 out of 6 in the Crystal Structure of Atp Sulfurylase in Complex with Chlorate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Atp Sulfurylase in Complex with Chlorate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca520

b:44.9
occ:1.00
 OD2 A:ASP489 2.2 40.6 1.0
CG A:ASP489 2.9 41.3 1.0
OD1 A:ASP489 3.0 40.0 1.0
CB A:ASP489 4.4 40.4 1.0
O A:HOH663 4.7 32.0 1.0

Calcium binding site 4 out of 6 in 1jee

Go back to Calcium Binding Sites List in 1jee
Calcium binding site 4 out of 6 in the Crystal Structure of Atp Sulfurylase in Complex with Chlorate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Atp Sulfurylase in Complex with Chlorate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca535

b:37.5
occ:1.00
 OD1 B:ASP151 2.2 37.6 1.0
OD2 B:ASP151 2.4 41.1 1.0
CG B:ASP151 2.7 39.0 1.0
CB B:ASP151 4.2 38.4 1.0
O B:PHE146 4.5 32.9 1.0
NZ B:LYS125 4.6 23.3 1.0
O B:HOH797 4.9 20.5 1.0

Calcium binding site 5 out of 6 in 1jee

Go back to Calcium Binding Sites List in 1jee
Calcium binding site 5 out of 6 in the Crystal Structure of Atp Sulfurylase in Complex with Chlorate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Atp Sulfurylase in Complex with Chlorate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca537

b:76.7
occ:1.00
 OD1 B:ASP303 2.6 37.2 1.0
NZ B:LYS297 2.9 39.9 1.0
OD2 B:ASP303 3.1 37.8 1.0
CG B:ASP303 3.2 37.5 1.0
O B:HOH1137 4.0 36.2 1.0
CE B:LYS297 4.2 40.3 1.0
CB B:ASP303 4.7 36.2 1.0

Calcium binding site 6 out of 6 in 1jee

Go back to Calcium Binding Sites List in 1jee
Calcium binding site 6 out of 6 in the Crystal Structure of Atp Sulfurylase in Complex with Chlorate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Atp Sulfurylase in Complex with Chlorate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca538

b:26.1
occ:1.00
 OD2 B:ASP489 2.4 41.1 1.0
OD1 B:ASP489 2.6 41.6 1.0
CG B:ASP489 2.9 41.3 1.0
CB B:ASP489 4.4 39.3 1.0
OG B:SER487 4.7 44.2 1.0
CB B:SER487 5.0 41.7 1.0

Reference:

T.C.Ullrich, R.Huber. The Complex Structures of Atp Sulfurylase with Thiosulfate, Adp and Chlorate Reveal New Insights in Inhibitory Effects and the Catalytic Cycle. J.Mol.Biol. V. 313 1117 2001.
ISSN: ISSN 0022-2836
PubMed: 11700067
DOI: 10.1006/JMBI.2001.5098
Page generated: Thu Jul 11 10:44:07 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy