Calcium in PDB 1jiw: Crystal Structure of the Apr-Aprin Complex
Protein crystallography data
The structure of Crystal Structure of the Apr-Aprin Complex, PDB code: 1jiw
was solved by
T.Hege,
R.E.Feltzer,
R.D.Gray,
U.Baumann,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
14.93 /
1.74
|
|
Space group
|
P 21 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
75.627,
118.432,
91.995,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
18.4 /
20.4
|
Other elements in 1jiw:
The structure of Crystal Structure of the Apr-Aprin Complex also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of the Apr-Aprin Complex
(pdb code 1jiw). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Crystal Structure of the Apr-Aprin Complex, PDB code: 1jiw:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 1jiw
Go back to
Calcium Binding Sites List in 1jiw
Calcium binding site 1 out
of 8 in the Crystal Structure of the Apr-Aprin Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of the Apr-Aprin Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca482
b:13.4
occ:1.00
|
OD1
|
P:ASP290
|
2.2
|
12.8
|
1.0
|
|
O
|
P:GLY287
|
2.3
|
14.8
|
1.0
|
|
O
|
P:ARG253
|
2.4
|
12.9
|
1.0
|
|
O
|
P:GLY255
|
2.4
|
14.1
|
1.0
|
|
OD2
|
P:ASP285
|
2.5
|
11.7
|
1.0
|
|
OD1
|
P:ASP285
|
2.5
|
13.2
|
1.0
|
|
OG1
|
P:THR257
|
2.5
|
12.2
|
1.0
|
|
CG
|
P:ASP285
|
2.8
|
13.7
|
1.0
|
|
CG
|
P:ASP290
|
3.0
|
11.7
|
1.0
|
|
OD2
|
P:ASP290
|
3.2
|
14.5
|
1.0
|
|
CB
|
P:THR257
|
3.5
|
11.2
|
1.0
|
|
C
|
P:GLY287
|
3.5
|
15.7
|
1.0
|
|
C
|
P:ARG253
|
3.5
|
13.4
|
1.0
|
|
C
|
P:GLY255
|
3.6
|
16.7
|
1.0
|
|
N
|
P:THR257
|
3.7
|
13.7
|
1.0
|
|
N
|
P:GLY255
|
4.0
|
15.2
|
1.0
|
|
C
|
P:THR254
|
4.0
|
14.8
|
1.0
|
|
CA
|
P:GLY288
|
4.2
|
14.8
|
1.0
|
|
CA
|
P:THR254
|
4.3
|
13.0
|
1.0
|
|
CA
|
P:THR257
|
4.3
|
12.9
|
1.0
|
|
CB
|
P:ASP285
|
4.3
|
13.4
|
1.0
|
|
CB
|
P:ARG253
|
4.3
|
12.8
|
1.0
|
|
N
|
P:GLY288
|
4.3
|
15.7
|
1.0
|
|
N
|
P:GLY287
|
4.3
|
14.1
|
1.0
|
|
N
|
P:THR254
|
4.3
|
14.0
|
1.0
|
|
CB
|
P:ASP290
|
4.4
|
12.8
|
1.0
|
|
O
|
P:HOH491
|
4.4
|
26.0
|
1.0
|
|
CA
|
P:GLY255
|
4.4
|
15.6
|
1.0
|
|
O
|
P:THR254
|
4.4
|
14.8
|
1.0
|
|
CA
|
P:GLY287
|
4.5
|
17.1
|
1.0
|
|
CA
|
P:ARG253
|
4.5
|
13.3
|
1.0
|
|
N
|
P:ASP256
|
4.5
|
15.4
|
1.0
|
|
C
|
P:GLY288
|
4.6
|
15.6
|
1.0
|
|
CA
|
P:ASP256
|
4.6
|
14.9
|
1.0
|
|
C
|
P:ASP256
|
4.6
|
14.9
|
1.0
|
|
CG2
|
P:THR257
|
4.7
|
9.4
|
1.0
|
|
O
|
P:GLY288
|
4.8
|
15.5
|
1.0
|
|
OH
|
P:TYR259
|
5.0
|
13.3
|
1.0
|
|
Calcium binding site 2 out
of 8 in 1jiw
Go back to
Calcium Binding Sites List in 1jiw
Calcium binding site 2 out
of 8 in the Crystal Structure of the Apr-Aprin Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of the Apr-Aprin Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca483
b:16.6
occ:1.00
|
OD2
|
P:ASP290
|
2.4
|
14.5
|
1.0
|
|
O
|
P:GLY288
|
2.4
|
15.5
|
1.0
|
|
O
|
P:THR327
|
2.4
|
12.3
|
1.0
|
|
O
|
P:HOH491
|
2.4
|
26.0
|
1.0
|
|
O
|
P:HOH520
|
2.5
|
19.6
|
1.0
|
|
OE1
|
P:GLU329
|
2.5
|
13.2
|
1.0
|
|
OE2
|
P:GLU329
|
2.5
|
16.4
|
1.0
|
|
CD
|
P:GLU329
|
2.9
|
16.2
|
1.0
|
|
CG
|
P:ASP290
|
3.5
|
11.7
|
1.0
|
|
C
|
P:GLY288
|
3.5
|
15.6
|
1.0
|
|
C
|
P:THR327
|
3.6
|
14.2
|
1.0
|
|
N
|
P:ASP290
|
4.1
|
12.7
|
1.0
|
|
N
|
P:GLY288
|
4.1
|
15.7
|
1.0
|
|
C
|
P:GLY287
|
4.2
|
15.7
|
1.0
|
|
CB
|
P:ASP290
|
4.2
|
12.8
|
1.0
|
|
O
|
P:GLY287
|
4.3
|
14.8
|
1.0
|
|
OD1
|
P:ASP290
|
4.3
|
12.8
|
1.0
|
|
CG
|
P:GLU329
|
4.4
|
15.2
|
1.0
|
|
CA
|
P:GLY288
|
4.4
|
14.8
|
1.0
|
|
N
|
P:ASN289
|
4.4
|
14.9
|
1.0
|
|
CB
|
P:THR327
|
4.4
|
15.4
|
1.0
|
|
O
|
P:HOH574
|
4.5
|
13.2
|
1.0
|
|
CA
|
P:VAL328
|
4.5
|
13.5
|
1.0
|
|
N
|
P:VAL328
|
4.5
|
14.8
|
1.0
|
|
OD1
|
P:ASP285
|
4.5
|
13.2
|
1.0
|
|
CA
|
P:ASN289
|
4.5
|
15.5
|
1.0
|
|
CA
|
P:THR327
|
4.6
|
14.5
|
1.0
|
|
N
|
P:GLU329
|
4.6
|
12.6
|
1.0
|
|
CG2
|
P:THR327
|
4.6
|
16.3
|
1.0
|
|
CA
|
P:GLY287
|
4.7
|
17.1
|
1.0
|
|
O
|
P:HOH871
|
4.7
|
39.0
|
1.0
|
|
C
|
P:ASN289
|
4.8
|
14.5
|
1.0
|
|
CA
|
P:ASP290
|
4.8
|
11.8
|
1.0
|
|
O
|
P:HOH698
|
4.9
|
29.5
|
1.0
|
|
N
|
P:THR327
|
5.0
|
13.0
|
1.0
|
|
C
|
P:VAL328
|
5.0
|
14.2
|
1.0
|
|
Calcium binding site 3 out
of 8 in 1jiw
Go back to
Calcium Binding Sites List in 1jiw
Calcium binding site 3 out
of 8 in the Crystal Structure of the Apr-Aprin Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of the Apr-Aprin Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca484
b:16.2
occ:1.00
|
O
|
P:GLY351
|
2.3
|
15.7
|
1.0
|
|
OD1
|
P:ASP356
|
2.3
|
13.4
|
1.0
|
|
O
|
P:GLY336
|
2.3
|
17.0
|
1.0
|
|
O
|
P:ALA353
|
2.4
|
17.6
|
1.0
|
|
O
|
P:GLY334
|
2.4
|
13.8
|
1.0
|
|
OD2
|
P:ASP338
|
2.5
|
14.3
|
1.0
|
|
CG
|
P:ASP356
|
3.1
|
15.8
|
1.0
|
|
OD2
|
P:ASP356
|
3.1
|
13.6
|
1.0
|
|
C
|
P:GLY351
|
3.4
|
16.2
|
1.0
|
|
CG
|
P:ASP338
|
3.4
|
14.3
|
1.0
|
|
C
|
P:GLY334
|
3.5
|
12.9
|
1.0
|
|
C
|
P:GLY336
|
3.6
|
14.5
|
1.0
|
|
C
|
P:ALA353
|
3.6
|
19.2
|
1.0
|
|
C
|
P:GLY352
|
3.9
|
16.5
|
1.0
|
|
N
|
P:GLY334
|
3.9
|
13.6
|
1.0
|
|
N
|
P:GLY336
|
4.0
|
13.5
|
1.0
|
|
O
|
P:GLY352
|
4.0
|
16.1
|
1.0
|
|
N
|
P:ASP338
|
4.1
|
13.2
|
1.0
|
|
N
|
P:ALA353
|
4.1
|
16.7
|
1.0
|
|
C
|
P:SER335
|
4.2
|
17.1
|
1.0
|
|
CB
|
P:ASP338
|
4.2
|
12.5
|
1.0
|
|
OD1
|
P:ASP338
|
4.2
|
14.2
|
1.0
|
|
CA
|
P:GLY352
|
4.2
|
17.0
|
1.0
|
|
N
|
P:GLY352
|
4.2
|
15.9
|
1.0
|
|
CA
|
P:GLY351
|
4.3
|
16.2
|
1.0
|
|
CA
|
P:GLY334
|
4.3
|
15.5
|
1.0
|
|
N
|
P:SER335
|
4.4
|
13.9
|
1.0
|
|
O
|
P:HOH506
|
4.4
|
13.1
|
1.0
|
|
CA
|
P:GLY336
|
4.4
|
14.0
|
1.0
|
|
CA
|
P:GLY354
|
4.4
|
16.1
|
1.0
|
|
CA
|
P:SER335
|
4.4
|
15.1
|
1.0
|
|
C
|
P:GLY333
|
4.4
|
13.4
|
1.0
|
|
N
|
P:GLY354
|
4.5
|
16.8
|
1.0
|
|
CB
|
P:ASP356
|
4.5
|
14.4
|
1.0
|
|
N
|
P:SER337
|
4.5
|
15.2
|
1.0
|
|
CA
|
P:ALA353
|
4.5
|
17.5
|
1.0
|
|
CA
|
P:SER337
|
4.5
|
14.5
|
1.0
|
|
O
|
P:SER335
|
4.7
|
17.4
|
1.0
|
|
CA
|
P:GLY333
|
4.7
|
12.6
|
1.0
|
|
C
|
P:SER337
|
4.7
|
13.6
|
1.0
|
|
O
|
P:GLY354
|
4.8
|
15.3
|
1.0
|
|
C
|
P:GLY354
|
4.8
|
15.2
|
1.0
|
|
CA
|
P:ASP338
|
4.8
|
11.4
|
1.0
|
|
CA
|
P:CA485
|
4.9
|
16.0
|
1.0
|
|
Calcium binding site 4 out
of 8 in 1jiw
Go back to
Calcium Binding Sites List in 1jiw
Calcium binding site 4 out
of 8 in the Crystal Structure of the Apr-Aprin Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of the Apr-Aprin Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca485
b:16.0
occ:1.00
|
O
|
P:GLY369
|
2.3
|
16.1
|
1.0
|
|
OD2
|
P:ASP356
|
2.4
|
13.6
|
1.0
|
|
O
|
P:ALA371
|
2.4
|
15.6
|
1.0
|
|
O
|
P:GLY354
|
2.4
|
15.3
|
1.0
|
|
OD1
|
P:ASP374
|
2.4
|
15.1
|
1.0
|
|
O
|
P:GLY352
|
2.4
|
16.1
|
1.0
|
|
OD2
|
P:ASP374
|
2.7
|
15.8
|
1.0
|
|
CG
|
P:ASP374
|
2.9
|
15.7
|
1.0
|
|
C
|
P:GLY369
|
3.4
|
17.3
|
1.0
|
|
CG
|
P:ASP356
|
3.5
|
15.8
|
1.0
|
|
C
|
P:ALA371
|
3.6
|
19.0
|
1.0
|
|
C
|
P:GLY354
|
3.6
|
15.2
|
1.0
|
|
C
|
P:GLY352
|
3.6
|
16.5
|
1.0
|
|
C
|
P:ALA353
|
3.9
|
19.2
|
1.0
|
|
C
|
P:GLY370
|
3.9
|
17.6
|
1.0
|
|
O
|
P:ALA353
|
4.0
|
17.6
|
1.0
|
|
N
|
P:GLY354
|
4.0
|
16.8
|
1.0
|
|
N
|
P:ALA371
|
4.0
|
16.8
|
1.0
|
|
O
|
P:GLY370
|
4.1
|
17.6
|
1.0
|
|
N
|
P:ASP356
|
4.1
|
15.5
|
1.0
|
|
CB
|
P:ASP356
|
4.1
|
14.4
|
1.0
|
|
CA
|
P:GLY370
|
4.2
|
17.9
|
1.0
|
|
N
|
P:GLY370
|
4.3
|
18.2
|
1.0
|
|
CA
|
P:ALA353
|
4.3
|
17.5
|
1.0
|
|
N
|
P:GLY352
|
4.3
|
15.9
|
1.0
|
|
C
|
P:GLY351
|
4.3
|
16.2
|
1.0
|
|
CA
|
P:GLY354
|
4.3
|
16.1
|
1.0
|
|
CB
|
P:ASP374
|
4.4
|
15.2
|
1.0
|
|
CA
|
P:GLY369
|
4.4
|
14.1
|
1.0
|
|
OD1
|
P:ASP356
|
4.4
|
13.4
|
1.0
|
|
N
|
P:ALA353
|
4.4
|
16.7
|
1.0
|
|
N
|
P:GLY372
|
4.4
|
17.6
|
1.0
|
|
CA
|
P:GLY372
|
4.4
|
18.3
|
1.0
|
|
CA
|
P:ALA371
|
4.5
|
17.8
|
1.0
|
|
CA
|
P:CA486
|
4.5
|
28.1
|
1.0
|
|
N
|
P:ASN355
|
4.6
|
16.5
|
1.0
|
|
O
|
P:GLY351
|
4.6
|
15.7
|
1.0
|
|
CA
|
P:GLY351
|
4.6
|
16.2
|
1.0
|
|
CA
|
P:GLY352
|
4.6
|
17.0
|
1.0
|
|
C
|
P:GLY372
|
4.7
|
16.8
|
1.0
|
|
CA
|
P:ASN355
|
4.7
|
16.1
|
1.0
|
|
O
|
P:GLY372
|
4.7
|
17.4
|
1.0
|
|
CA
|
P:ASP356
|
4.8
|
14.9
|
1.0
|
|
CA
|
P:CA484
|
4.9
|
16.2
|
1.0
|
|
C
|
P:ASN355
|
4.9
|
15.5
|
1.0
|
|
Calcium binding site 5 out
of 8 in 1jiw
Go back to
Calcium Binding Sites List in 1jiw
Calcium binding site 5 out
of 8 in the Crystal Structure of the Apr-Aprin Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of the Apr-Aprin Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca486
b:28.1
occ:1.00
|
O
|
P:HOH492
|
2.3
|
39.7
|
1.0
|
|
OD2
|
P:ASP374
|
2.3
|
15.8
|
1.0
|
|
O
|
P:GLY370
|
2.4
|
17.6
|
1.0
|
|
O
|
P:GLY372
|
2.4
|
17.4
|
1.0
|
|
O
|
P:HOH533
|
2.5
|
17.1
|
1.0
|
|
OD1
|
P:ASP400
|
2.6
|
16.1
|
1.0
|
|
CG
|
P:ASP374
|
3.4
|
15.7
|
1.0
|
|
CG
|
P:ASP400
|
3.4
|
16.4
|
1.0
|
|
OD2
|
P:ASP400
|
3.5
|
16.7
|
1.0
|
|
C
|
P:GLY370
|
3.5
|
17.6
|
1.0
|
|
C
|
P:GLY372
|
3.5
|
16.8
|
1.0
|
|
O
|
P:HOH603
|
3.8
|
20.8
|
1.0
|
|
C
|
P:ALA371
|
3.8
|
19.0
|
1.0
|
|
CB
|
P:ASP374
|
3.8
|
15.2
|
1.0
|
|
N
|
P:GLY372
|
4.0
|
17.6
|
1.0
|
|
C
|
P:GLY369
|
4.0
|
17.3
|
1.0
|
|
N
|
P:ASP374
|
4.0
|
16.2
|
1.0
|
|
O
|
P:ALA371
|
4.0
|
15.6
|
1.0
|
|
N
|
P:GLY370
|
4.1
|
18.2
|
1.0
|
|
O
|
P:GLY369
|
4.2
|
16.1
|
1.0
|
|
CA
|
P:GLY369
|
4.2
|
14.1
|
1.0
|
|
OE1
|
P:GLN399
|
4.3
|
25.1
|
1.0
|
|
CA
|
P:GLY372
|
4.3
|
18.3
|
1.0
|
|
CA
|
P:ALA371
|
4.3
|
17.8
|
1.0
|
|
N
|
P:ALA371
|
4.4
|
16.8
|
1.0
|
|
OD1
|
P:ASP374
|
4.4
|
15.1
|
1.0
|
|
CA
|
P:CA485
|
4.5
|
16.0
|
1.0
|
|
CA
|
P:GLY370
|
4.5
|
17.9
|
1.0
|
|
N
|
P:ALA373
|
4.5
|
18.5
|
1.0
|
|
CD
|
P:GLN399
|
4.6
|
24.1
|
1.0
|
|
CA
|
P:ASP374
|
4.6
|
15.1
|
1.0
|
|
CA
|
P:ALA373
|
4.7
|
16.9
|
1.0
|
|
C
|
P:ALA373
|
4.8
|
15.7
|
1.0
|
|
CB
|
P:ASP400
|
4.8
|
16.3
|
1.0
|
|
CG
|
P:GLN399
|
4.8
|
23.2
|
1.0
|
|
Calcium binding site 6 out
of 8 in 1jiw
Go back to
Calcium Binding Sites List in 1jiw
Calcium binding site 6 out
of 8 in the Crystal Structure of the Apr-Aprin Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of the Apr-Aprin Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca487
b:13.8
occ:1.00
|
O
|
P:ASN343
|
2.3
|
15.2
|
1.0
|
|
OD1
|
P:ASN347
|
2.3
|
13.9
|
1.0
|
|
O
|
P:LEU362
|
2.3
|
16.0
|
1.0
|
|
O
|
P:GLY360
|
2.3
|
12.8
|
1.0
|
|
O
|
P:VAL345
|
2.4
|
14.0
|
1.0
|
|
OD1
|
P:ASP365
|
2.4
|
15.3
|
1.0
|
|
OD2
|
P:ASP365
|
3.1
|
11.6
|
1.0
|
|
CG
|
P:ASP365
|
3.1
|
13.1
|
1.0
|
|
CG
|
P:ASN347
|
3.4
|
13.8
|
1.0
|
|
C
|
P:ASN343
|
3.5
|
13.8
|
1.0
|
|
C
|
P:GLY360
|
3.5
|
11.5
|
1.0
|
|
C
|
P:VAL345
|
3.5
|
13.8
|
1.0
|
|
C
|
P:LEU362
|
3.6
|
16.8
|
1.0
|
|
N
|
P:ASN343
|
3.9
|
11.8
|
1.0
|
|
C
|
P:GLY361
|
4.0
|
12.0
|
1.0
|
|
N
|
P:LEU362
|
4.0
|
13.9
|
1.0
|
|
N
|
P:VAL345
|
4.1
|
15.3
|
1.0
|
|
N
|
P:ASN347
|
4.1
|
13.2
|
1.0
|
|
C
|
P:ASP344
|
4.1
|
15.9
|
1.0
|
|
ND2
|
P:ASN347
|
4.2
|
15.0
|
1.0
|
|
O
|
P:GLY361
|
4.2
|
15.5
|
1.0
|
|
CB
|
P:ASN347
|
4.3
|
14.8
|
1.0
|
|
CA
|
P:ASN343
|
4.3
|
13.1
|
1.0
|
|
CA
|
P:GLY361
|
4.4
|
11.3
|
1.0
|
|
N
|
P:GLY361
|
4.4
|
11.1
|
1.0
|
|
OD1
|
P:ASN343
|
4.4
|
14.0
|
1.0
|
|
CA
|
P:GLY360
|
4.4
|
11.9
|
1.0
|
|
N
|
P:ASP344
|
4.4
|
12.8
|
1.0
|
|
CA
|
P:LEU362
|
4.4
|
15.1
|
1.0
|
|
CA
|
P:VAL345
|
4.4
|
13.9
|
1.0
|
|
N
|
P:ALA346
|
4.4
|
14.7
|
1.0
|
|
CA
|
P:ALA346
|
4.5
|
14.4
|
1.0
|
|
N
|
P:GLY363
|
4.5
|
14.9
|
1.0
|
|
CA
|
P:ASP344
|
4.5
|
16.1
|
1.0
|
|
O
|
P:ASP344
|
4.5
|
15.5
|
1.0
|
|
C
|
P:GLY342
|
4.5
|
12.6
|
1.0
|
|
CA
|
P:GLY363
|
4.6
|
15.4
|
1.0
|
|
CB
|
P:ASP365
|
4.6
|
12.3
|
1.0
|
|
C
|
P:ALA346
|
4.6
|
16.5
|
1.0
|
|
O
|
P:GLY363
|
4.7
|
14.5
|
1.0
|
|
CA
|
P:GLY342
|
4.7
|
11.3
|
1.0
|
|
CA
|
P:CA488
|
4.7
|
14.5
|
1.0
|
|
C
|
P:GLY363
|
4.8
|
14.9
|
1.0
|
|
CA
|
P:ASN347
|
4.8
|
13.9
|
1.0
|
|
Calcium binding site 7 out
of 8 in 1jiw
Go back to
Calcium Binding Sites List in 1jiw
Calcium binding site 7 out
of 8 in the Crystal Structure of the Apr-Aprin Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of the Apr-Aprin Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca488
b:14.5
occ:1.00
|
O
|
P:HOH495
|
2.3
|
12.7
|
1.0
|
|
OD2
|
P:ASP365
|
2.3
|
11.6
|
1.0
|
|
O
|
P:GLU383
|
2.3
|
14.7
|
1.0
|
|
O
|
P:GLY363
|
2.3
|
14.5
|
1.0
|
|
O
|
P:GLY361
|
2.4
|
15.5
|
1.0
|
|
OD1
|
P:ASP390
|
2.5
|
16.4
|
1.0
|
|
CG
|
P:ASP390
|
3.3
|
14.2
|
1.0
|
|
OD2
|
P:ASP390
|
3.3
|
18.5
|
1.0
|
|
CG
|
P:ASP365
|
3.4
|
13.1
|
1.0
|
|
C
|
P:GLU383
|
3.5
|
15.9
|
1.0
|
|
C
|
P:GLY361
|
3.5
|
12.0
|
1.0
|
|
C
|
P:GLY363
|
3.5
|
14.9
|
1.0
|
|
C
|
P:LEU362
|
3.9
|
16.8
|
1.0
|
|
O
|
P:LEU362
|
3.9
|
16.0
|
1.0
|
|
N
|
P:ASP365
|
4.0
|
14.2
|
1.0
|
|
C
|
P:GLY360
|
4.1
|
11.5
|
1.0
|
|
N
|
P:GLY363
|
4.1
|
14.9
|
1.0
|
|
N
|
P:GLY361
|
4.1
|
11.1
|
1.0
|
|
CB
|
P:ASP365
|
4.1
|
12.3
|
1.0
|
|
CA
|
P:GLU383
|
4.2
|
15.5
|
1.0
|
|
CB
|
P:GLU383
|
4.3
|
16.6
|
1.0
|
|
CA
|
P:LEU362
|
4.3
|
15.1
|
1.0
|
|
O
|
P:GLY360
|
4.4
|
12.8
|
1.0
|
|
OD1
|
P:ASP365
|
4.4
|
15.3
|
1.0
|
|
N
|
P:LEU362
|
4.4
|
13.9
|
1.0
|
|
CA
|
P:GLY363
|
4.4
|
15.4
|
1.0
|
|
CA
|
P:GLY360
|
4.4
|
11.9
|
1.0
|
|
CA
|
P:GLY361
|
4.5
|
11.3
|
1.0
|
|
N
|
P:ALA364
|
4.5
|
14.8
|
1.0
|
|
N
|
P:SER384
|
4.5
|
17.2
|
1.0
|
|
CA
|
P:ALA364
|
4.6
|
14.3
|
1.0
|
|
CB
|
P:ASP390
|
4.7
|
15.3
|
1.0
|
|
CA
|
P:CA487
|
4.7
|
13.8
|
1.0
|
|
O
|
P:HOH505
|
4.8
|
14.6
|
1.0
|
|
CA
|
P:SER384
|
4.8
|
18.4
|
1.0
|
|
CA
|
P:ASP365
|
4.8
|
15.2
|
1.0
|
|
C
|
P:ALA364
|
4.8
|
17.7
|
1.0
|
|
CB
|
P:SER384
|
4.9
|
17.4
|
1.0
|
|
Calcium binding site 8 out
of 8 in 1jiw
Go back to
Calcium Binding Sites List in 1jiw
Calcium binding site 8 out
of 8 in the Crystal Structure of the Apr-Aprin Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of the Apr-Aprin Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Ca489
b:1.0
occ:1.00
|
O
|
P:HIS452
|
2.2
|
28.4
|
1.0
|
|
OD2
|
P:ASP454
|
2.3
|
30.5
|
1.0
|
|
OD1
|
P:ASP450
|
2.3
|
38.6
|
1.0
|
|
OG
|
P:SER448
|
2.4
|
28.4
|
1.0
|
|
OD1
|
P:ASP446
|
2.5
|
27.1
|
1.0
|
|
CG
|
P:ASP454
|
3.2
|
32.8
|
1.0
|
|
CG
|
P:ASP450
|
3.3
|
36.8
|
1.0
|
|
C
|
P:HIS452
|
3.4
|
31.0
|
1.0
|
|
CB
|
P:SER448
|
3.6
|
29.7
|
1.0
|
|
CG
|
P:ASP446
|
3.6
|
27.4
|
1.0
|
|
CB
|
P:ASP454
|
3.8
|
30.4
|
1.0
|
|
OD2
|
P:ASP450
|
3.9
|
38.1
|
1.0
|
|
N
|
P:SER448
|
3.9
|
30.0
|
1.0
|
|
N
|
P:HIS452
|
4.1
|
33.9
|
1.0
|
|
CA
|
P:HIS452
|
4.1
|
33.6
|
1.0
|
|
N
|
P:ASP454
|
4.1
|
29.3
|
1.0
|
|
CA
|
P:ASP446
|
4.2
|
25.1
|
1.0
|
|
OD1
|
P:ASP454
|
4.2
|
34.5
|
1.0
|
|
CB
|
P:HIS452
|
4.2
|
37.6
|
1.0
|
|
CA
|
P:SER448
|
4.3
|
30.5
|
1.0
|
|
N
|
P:ASP450
|
4.3
|
36.7
|
1.0
|
|
CB
|
P:ASP446
|
4.3
|
26.6
|
1.0
|
|
N
|
P:GLY449
|
4.3
|
32.5
|
1.0
|
|
C
|
P:ALA453
|
4.3
|
31.0
|
1.0
|
|
N
|
P:PHE447
|
4.4
|
25.7
|
1.0
|
|
N
|
P:ALA453
|
4.5
|
30.4
|
1.0
|
|
CB
|
P:ASP450
|
4.5
|
36.9
|
1.0
|
|
C
|
P:ASP446
|
4.5
|
25.6
|
1.0
|
|
OD2
|
P:ASP446
|
4.5
|
31.0
|
1.0
|
|
CA
|
P:ASP454
|
4.5
|
29.7
|
1.0
|
|
CA
|
P:ALA453
|
4.7
|
31.2
|
1.0
|
|
C
|
P:SER448
|
4.7
|
31.4
|
1.0
|
|
O
|
P:ALA453
|
4.8
|
32.5
|
1.0
|
|
CA
|
P:ASP450
|
4.8
|
36.4
|
1.0
|
|
Reference:
T.Hege,
R.E.Feltzer,
R.D.Gray,
U.Baumann.
Crystal Structure of A Complex Between Pseudomonas Aeruginosa Alkaline Protease and Its Cognate Inhibitor: Inhibition By A Zinc-NH2 Coordinative Bond J.Biol.Chem. V. 276 35087 2001.
ISSN: ISSN 0021-9258
PubMed: 11445573
DOI: 10.1074/JBC.M104020200
Page generated: Mon Jul 7 16:09:19 2025
|
