Calcium in PDB 1k5w: Three-Dimensional Structure of the Synaptotagmin 1 C2B- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine

The binding sites of Calcium atom in the Three-Dimensional Structure of the Synaptotagmin 1 C2B- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine (pdb code 1k5w). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Three-Dimensional Structure of the Synaptotagmin 1 C2B- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine, PDB code: 1k5w:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Three-Dimensional Structure of the Synaptotagmin 1 C2B- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Three-Dimensional Structure of the Synaptotagmin 1 C2B- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca500 b:0.0 occ:1.00 OD2 A:ASP309 2.2 0.0 1.0 OD1 A:ASP303 2.6 0.0 1.0 OD1 A:ASP365 2.8 0.0 1.0 OD1 A:ASP363 2.8 0.0 1.0 O A:TYR364 2.8 0.0 1.0 OD2 A:ASP303 2.8 0.0 1.0 HA A:SER308 3.0 0.0 1.0 CG A:ASP303 3.0 0.0 1.0 H A:ASP309 3.2 0.0 1.0 OD2 A:ASP363 3.3 0.0 1.0 CG A:ASP309 3.3 0.0 1.0 CG A:ASP363 3.4 0.0 1.0 HB2 A:ASP309 3.5 0.0 1.0 N A:ASP309 3.6 0.0 1.0 HB2 A:MET302 3.6 0.0 1.0 CA A:CA501 3.7 0.0 1.0 CG A:ASP365 3.8 0.0 1.0 HA A:ASP365 3.8 0.0 1.0 CB A:ASP309 3.9 0.0 1.0 CA A:SER308 3.9 0.0 1.0 C A:SER308 4.0 0.0 1.0 C A:TYR364 4.0 0.0 1.0 OD2 A:ASP365 4.3 0.0 1.0 O A:LEU307 4.3 0.0 1.0 CA A:ASP309 4.3 0.0 1.0 OD1 A:ASP309 4.4 0.0 1.0 CB A:ASP303 4.5 0.0 1.0 HB3 A:SER308 4.5 0.0 1.0 CA A:ASP365 4.6 0.0 1.0 CB A:MET302 4.7 0.0 1.0 H A:TYR364 4.7 0.0 1.0 N A:ASP365 4.8 0.0 1.0 CB A:ASP365 4.8 0.0 1.0 H A:ASP303 4.8 0.0 1.0 N A:TYR364 4.8 0.0 1.0 N A:SER308 4.8 0.0 1.0 CB A:SER308 4.8 0.0 1.0 HB3 A:ASP309 4.8 0.0 1.0 O A:SER308 4.9 0.0 1.0 N A:ASP303 4.9 0.0 1.0 CB A:ASP363 4.9 0.0 1.0 C A:LEU307 5.0 0.0 1.0 HB2 A:ASP303 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the Three-Dimensional Structure of the Synaptotagmin 1 C2B- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Three-Dimensional Structure of the Synaptotagmin 1 C2B- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:0.0 occ:1.00 HB2 A:MET302 2.3 0.0 1.0 HB3 A:MET302 2.4 0.0 1.0 CB A:MET302 2.8 0.0 1.0 OD2 A:ASP363 2.8 0.0 1.0 OD2 A:ASP365 2.8 0.0 1.0 OD1 A:ASP365 2.8 0.0 1.0 OD2 A:ASP371 2.8 0.0 1.0 OD1 A:ASP303 2.8 0.0 1.0 O A:MET302 2.8 0.0 1.0 C A:MET302 3.0 0.0 1.0 CG A:ASP365 3.2 0.0 1.0 CA A:MET302 3.5 0.0 1.0 HA A:ASP303 3.6 0.0 1.0 CA A:CA500 3.7 0.0 1.0 N A:ASP303 3.7 0.0 1.0 CG A:ASP371 3.9 0.0 1.0 CG A:ASP363 4.0 0.0 1.0 CG A:ASP303 4.0 0.0 1.0 HA A:MET302 4.1 0.0 1.0 CG A:MET302 4.1 0.0 1.0 HG3 A:MET302 4.1 0.0 1.0 CA A:ASP303 4.2 0.0 1.0 H A:ASP303 4.3 0.0 1.0 OD1 A:ASP363 4.5 0.0 1.0 OD1 A:ASP371 4.5 0.0 1.0 HG2 A:MET302 4.6 0.0 1.0 CB A:ASP365 4.7 0.0 1.0 N A:MET302 4.7 0.0 1.0 HB2 A:ASP371 4.7 0.0 1.0 CB A:ASP303 4.7 0.0 1.0 H A:MET302 4.8 0.0 1.0 OD2 A:ASP303 4.9 0.0 1.0 HB3 A:ASP363 4.9 0.0 1.0 HB3 A:ASP365 5.0 0.0 1.0 CB A:ASP371 5.0 0.0 1.0

I.Fernandez, D.Arac, J.Ubach, S.H.Gerber, O.Shin, Y.Gao, R.G.Anderson, T.C.Sudhof, J.Rizo. Three-Dimensional Structure of the Synaptotagmin 1 C2B-Domain: Synaptotagmin 1 As A Phospholipid Binding Machine. Neuron V. 32 1057 2001.
ISSN: ISSN 0896-6273
PubMed: 11754837
DOI: 10.1016/S0896-6273(01)00548-7