Atomistry » Calcium » PDB 1l3w-1lkv » 1lec
Atomistry »
  Calcium »
    PDB 1l3w-1lkv »
      1lec »

Calcium in PDB 1lec: Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution

Protein crystallography data

The structure of Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution, PDB code: 1lec was solved by L.Delbaere, M.Vandonselaar, J.Quail, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.00
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.900, 78.900, 89.100, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1lec:

The structure of Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution (pdb code 1lec). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution, PDB code: 1lec:

Calcium binding site 1 out of 1 in 1lec

Go back to Calcium Binding Sites List in 1lec
Calcium binding site 1 out of 1 in the Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca251

b:21.6
occ:1.00
O A:HOH329 2.2 18.3 0.9
O A:TRP133 2.3 26.7 1.0
OD2 A:ASP140 2.4 23.0 1.0
O A:HOH333 2.4 17.2 0.8
OD1 A:ASP131 2.4 20.3 1.0
OD1 A:ASN135 2.4 32.3 1.0
OD2 A:ASP131 2.7 17.6 1.0
CG A:ASP131 2.9 19.9 1.0
C A:TRP133 3.5 25.7 1.0
CG A:ASP140 3.5 20.5 1.0
CG A:ASN135 3.5 31.5 1.0
OD1 A:ASP140 3.9 23.7 1.0
N A:ASN135 3.9 28.8 1.0
CB A:ASN135 4.1 27.0 1.0
MN A:MN250 4.2 20.7 1.0
CA A:TRP133 4.2 26.4 1.0
CB A:TRP133 4.2 29.3 1.0
CB A:ASP131 4.4 17.0 1.0
N A:TRP133 4.4 23.3 1.0
ND2 A:ASN135 4.5 29.7 1.0
O A:HOH332 4.5 20.5 1.0
N A:ILE134 4.5 27.1 1.0
CA A:ASN135 4.6 29.4 1.0
CD1 A:TRP133 4.6 37.5 1.0
OD1 A:ASP89 4.6 22.1 1.0
CB A:ASP140 4.7 20.1 1.0
C A:ILE134 4.7 28.7 1.0
CA A:ILE134 4.7 27.1 1.0
CE1 A:HIS145 4.7 19.2 1.0
CA A:GLY107 4.7 22.3 1.0
O A:ASP89 4.8 20.0 1.0
O A:GLY107 4.9 27.8 1.0
CG A:TRP133 4.9 35.8 1.0
NE2 A:HIS145 4.9 24.4 1.0

Reference:

L.T.Delbaere, M.Vandonselaar, L.Prasad, J.W.Quail, K.S.Wilson, Z.Dauter. Structures of the Lectin IV of Griffonia Simplicifolia and Its Complex with the Lewis B Human Blood Group Determinant at 2.0 A Resolution. J.Mol.Biol. V. 230 950 1993.
ISSN: ISSN 0022-2836
PubMed: 8478943
DOI: 10.1006/JMBI.1993.1212
Page generated: Thu Jul 11 11:52:17 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy