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Calcium in PDB 1lhv: Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel

Protein crystallography data

The structure of Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel, PDB code: 1lhv was solved by I.Grishkovskaya, G.V.Avvakumov, G.L.Hammond, M.G.Catalano, Y.A.Muller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.65 / 2.00
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 103.980, 103.980, 83.930, 90.00, 90.00, 120.00
R / Rfree (%) 21.5 / 26.4

Other elements in 1lhv:

The structure of Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel (pdb code 1lhv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel, PDB code: 1lhv:

Calcium binding site 1 out of 1 in 1lhv

Go back to Calcium Binding Sites List in 1lhv
Calcium binding site 1 out of 1 in the Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:39.5
occ:1.00
OD2 A:ASP50 2.1 38.7 1.0
O A:HOH535 2.2 39.9 1.0
O A:GLU52 2.3 35.5 1.0
O A:ALA160 2.4 37.8 1.0
OD1 A:ASP50 2.5 38.9 1.0
O A:HOH512 2.6 41.6 1.0
CG A:ASP50 2.6 38.4 1.0
C A:GLU52 3.5 33.8 1.0
C A:ALA160 3.5 36.8 1.0
CB A:ASP50 4.1 35.2 1.0
CA A:LEU161 4.2 40.1 1.0
N A:LEU161 4.3 38.1 1.0
CA A:GLU52 4.3 34.5 1.0
N A:GLU52 4.3 32.9 1.0
OD2 A:ASP162 4.3 45.4 0.5
O A:VAL158 4.4 32.0 1.0
N A:GLY53 4.4 32.1 1.0
CB A:GLU52 4.5 31.8 1.0
CA A:GLY53 4.5 31.1 1.0
CA A:ALA160 4.6 37.7 1.0
CD1 A:LEU161 4.6 44.1 1.0
N A:ASP162 4.6 40.8 0.5
N A:ASP162 4.6 41.4 0.5
CB A:ALA160 4.6 35.5 1.0
O A:HOH531 4.9 53.1 1.0
C A:LEU161 5.0 41.1 1.0
N A:ALA160 5.0 35.5 1.0

Reference:

I.Grishkovskaya, G.V.Avvakumov, G.L.Hammond, M.G.Catalano, Y.A.Muller. Steroid Ligands Bind Human Sex Hormone-Binding Globulin in Specific Orientations and Produce Distinct Changes in Protein Conformation J.Biol.Chem. V. 277 32086 2002.
ISSN: ISSN 0021-9258
PubMed: 12065592
DOI: 10.1074/JBC.M203999200
Page generated: Sat Dec 12 03:05:08 2020

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