Atomistry » Calcium » PDB 1llp-1ltj » 1lmj
Atomistry »
  Calcium »
    PDB 1llp-1ltj »
      1lmj »

Calcium in PDB 1lmj: uc(Nmr) Study of the Fibrillin-1 CBEGF12-13 Pair of CA2+ Binding Epidermal Growth Factor-Like Domains

Calcium Binding Sites:

The binding sites of Calcium atom in the uc(Nmr) Study of the Fibrillin-1 CBEGF12-13 Pair of CA2+ Binding Epidermal Growth Factor-Like Domains (pdb code 1lmj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the uc(Nmr) Study of the Fibrillin-1 CBEGF12-13 Pair of CA2+ Binding Epidermal Growth Factor-Like Domains, PDB code: 1lmj:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1lmj

Go back to Calcium Binding Sites List in 1lmj
Calcium binding site 1 out of 2 in the uc(Nmr) Study of the Fibrillin-1 CBEGF12-13 Pair of CA2+ Binding Epidermal Growth Factor-Like Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of uc(Nmr) Study of the Fibrillin-1 CBEGF12-13 Pair of CA2+ Binding Epidermal Growth Factor-Like Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca101

b:0.0
occ:1.00
HD22 A:ASN22 2.4 0.0 1.0
O A:ILE5 2.4 0.0 1.0
O A:THR23 2.4 0.0 1.0
OE1 A:GLU7 2.4 0.0 1.0
H A:THR23 2.5 0.0 1.0
OD1 A:ASP4 2.6 0.0 1.0
OD1 A:ASN22 2.6 0.0 1.0
OE2 A:GLU7 2.6 0.0 1.0
ND2 A:ASN22 2.8 0.0 1.0
CG A:ASN22 2.8 0.0 1.0
CD A:GLU7 2.9 0.0 1.0
HA A:ASP4 3.1 0.0 1.0
N A:THR23 3.2 0.0 1.0
C A:THR23 3.3 0.0 1.0
O A:ASP26 3.3 0.0 1.0
C A:ASP4 3.5 0.0 1.0
HD21 A:ASN22 3.5 0.0 1.0
CG A:ASP4 3.6 0.0 1.0
N A:ILE5 3.6 0.0 1.0
C A:ILE5 3.6 0.0 1.0
H A:ASP26 3.7 0.0 1.0
CA A:ASP4 3.7 0.0 1.0
H A:ILE5 3.7 0.0 1.0
HA A:ASN22 3.8 0.0 1.0
H A:GLU7 3.8 0.0 1.0
CA A:THR23 3.9 0.0 1.0
O A:ASP4 3.9 0.0 1.0
CB A:ASN22 4.1 0.0 1.0
C A:ASN22 4.1 0.0 1.0
CB A:ASP4 4.2 0.0 1.0
H A:GLY25 4.2 0.0 1.0
CA A:ILE5 4.2 0.0 1.0
CA A:ASN22 4.2 0.0 1.0
HA A:PRO24 4.2 0.0 1.0
HA A:ASP6 4.2 0.0 1.0
N A:PRO24 4.3 0.0 1.0
CG A:GLU7 4.4 0.0 1.0
HA A:THR23 4.4 0.0 1.0
OD2 A:ASP4 4.5 0.0 1.0
HB2 A:ASP4 4.5 0.0 1.0
C A:ASP26 4.5 0.0 1.0
HB3 A:PHE27 4.6 0.0 1.0
HB3 A:ASN22 4.6 0.0 1.0
N A:ASP26 4.6 0.0 1.0
HG22 A:ILE5 4.6 0.0 1.0
N A:GLY25 4.7 0.0 1.0
N A:ASP6 4.7 0.0 1.0
CA A:PRO24 4.7 0.0 1.0
HG2 A:GLU7 4.7 0.0 1.0
N A:GLU7 4.7 0.0 1.0
HA A:ILE5 4.8 0.0 1.0
HB2 A:ASN22 4.8 0.0 1.0
HB2 A:GLU7 4.8 0.0 1.0
HG3 A:GLU7 4.9 0.0 1.0
CA A:ASP6 4.9 0.0 1.0
C A:PRO24 5.0 0.0 1.0

Calcium binding site 2 out of 2 in 1lmj

Go back to Calcium Binding Sites List in 1lmj
Calcium binding site 2 out of 2 in the uc(Nmr) Study of the Fibrillin-1 CBEGF12-13 Pair of CA2+ Binding Epidermal Growth Factor-Like Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of uc(Nmr) Study of the Fibrillin-1 CBEGF12-13 Pair of CA2+ Binding Epidermal Growth Factor-Like Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca102

b:0.0
occ:1.00
HB2 A:ASP47 2.2 0.0 1.0
HD22 A:ASN65 2.3 0.0 1.0
OE1 A:GLU50 2.4 0.0 1.0
O A:ILE48 2.4 0.0 1.0
OD2 A:ASP47 2.4 0.0 1.0
OD1 A:ASN65 2.4 0.0 1.0
O A:THR66 2.6 0.0 1.0
OE2 A:GLU50 2.6 0.0 1.0
CG A:ASP47 2.8 0.0 1.0
CD A:GLU50 2.8 0.0 1.0
ND2 A:ASN65 2.9 0.0 1.0
CB A:ASP47 2.9 0.0 1.0
CG A:ASN65 2.9 0.0 1.0
O A:SER69 3.4 0.0 1.0
H A:GLU50 3.5 0.0 1.0
C A:ASP47 3.5 0.0 1.0
C A:ILE48 3.5 0.0 1.0
H A:SER69 3.6 0.0 1.0
N A:ILE48 3.6 0.0 1.0
HG13 A:ILE48 3.6 0.0 1.0
CA A:ASP47 3.7 0.0 1.0
HD21 A:ASN65 3.7 0.0 1.0
HB3 A:ASP47 3.8 0.0 1.0
H A:ILE48 3.8 0.0 1.0
OD1 A:ASP47 3.8 0.0 1.0
C A:THR66 3.8 0.0 1.0
O A:ASP47 3.9 0.0 1.0
H A:THR66 4.0 0.0 1.0
HA A:ASP47 4.1 0.0 1.0
CA A:ILE48 4.2 0.0 1.0
N A:THR66 4.2 0.0 1.0
HA A:ASP49 4.2 0.0 1.0
HA A:GLU67 4.3 0.0 1.0
CG A:GLU50 4.3 0.0 1.0
CB A:ASN65 4.3 0.0 1.0
HB2 A:GLU50 4.4 0.0 1.0
C A:SER69 4.4 0.0 1.0
N A:SER69 4.4 0.0 1.0
N A:GLU50 4.4 0.0 1.0
HB3 A:TYR70 4.5 0.0 1.0
H A:GLY68 4.5 0.0 1.0
C A:ASN65 4.6 0.0 1.0
N A:ASP49 4.6 0.0 1.0
HA A:ASN65 4.6 0.0 1.0
CA A:THR66 4.6 0.0 1.0
CG1 A:ILE48 4.7 0.0 1.0
HG3 A:GLU50 4.7 0.0 1.0
N A:GLY68 4.7 0.0 1.0
HB2 A:ASN65 4.8 0.0 1.0
CA A:ASN65 4.8 0.0 1.0
N A:GLU67 4.8 0.0 1.0
CB A:GLU50 4.8 0.0 1.0
CA A:ASP49 4.9 0.0 1.0
CA A:GLU67 4.9 0.0 1.0
O A:GLY34 4.9 0.0 1.0
HG2 A:GLU50 4.9 0.0 1.0
C A:GLU67 4.9 0.0 1.0
HA A:ILE48 5.0 0.0 1.0

Reference:

R.S.Smallridge, P.Whiteman, J.M.Werner, I.D.Campbell, P.A.Handford, A.K.Downing. Solution Structure and Dynamics of A Calcium Binding Epidermal Growth Factor-Like Domain Pair From the Neonatal Region of Human Fibrillin-1. J.Biol.Chem. V. 278 12199 2003.
ISSN: ISSN 0021-9258
PubMed: 12511552
DOI: 10.1074/JBC.M208266200
Page generated: Sat Dec 12 03:05:16 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy