Calcium in PDB 1lob: Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site

The structure of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site, PDB code: 1lob was solved by Y.Bourne, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	56.300, 139.800, 62.700, 90.00, 91.00, 90.00
R / Rfree (%)	18.2 / n/a

The structure of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site also contains other interesting chemical elements:

Manganese

(Mn)

4 atoms

The binding sites of Calcium atom in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site (pdb code 1lob). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site, PDB code: 1lob:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca228 b:13.2 occ:1.00 O A:HOH269 1.6 29.4 1.0 O A:HOH268 1.7 14.2 1.0 O A:PHE123 1.9 10.9 1.0 OD1 A:ASN125 2.3 6.8 1.0 OD1 A:ASP121 2.3 6.7 1.0 OD2 A:ASP129 2.4 10.1 1.0 OD2 A:ASP121 2.6 8.4 1.0 CG A:ASP121 2.8 9.1 1.0 C A:PHE123 3.2 9.9 1.0 CG A:ASP129 3.5 12.4 1.0 CG A:ASN125 3.5 9.8 1.0 OD1 A:ASP129 3.8 10.1 1.0 N A:ASN125 4.1 10.8 1.0 CA A:PHE123 4.2 8.2 1.0 N A:TYR124 4.2 11.2 1.0 CB A:ASN125 4.2 11.1 1.0 N A:PHE123 4.3 9.9 1.0 O A:HOH276 4.3 15.8 1.0 CB A:ASP121 4.3 9.8 1.0 MN A:MN229 4.3 17.8 1.0 CA A:TYR124 4.4 12.6 1.0 CB A:PHE123 4.5 9.8 1.0 O A:ASP81 4.5 8.0 1.0 NE1 A:TRP128 4.5 9.2 1.0 C A:TYR124 4.6 13.2 1.0 ND2 A:ASN125 4.6 7.9 1.0 OD1 A:ASP81 4.6 12.1 1.0 O A:GLY99 4.6 9.5 1.0 CA A:ASN125 4.8 10.0 1.0 CB A:ASP129 4.8 12.7 1.0 CE1 A:HIS136 4.8 9.0 1.0 CD1 A:PHE123 4.9 8.2 1.0 CA A:GLY99 4.9 8.9 1.0 NE2 A:HIS136 5.0 4.4 1.0

Calcium binding site 2 out of 4 in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca458 b:46.8 occ:1.00 O C:HOH489 1.5 42.2 1.0 O C:HOH490 1.6 48.1 1.0 OD1 C:ASN125 1.6 37.6 1.0 O C:PHE123 2.1 35.3 1.0 OD1 C:ASP121 2.6 28.3 1.0 CG C:ASN125 2.8 35.0 1.0 OD2 C:ASP129 3.0 31.3 1.0 OD2 C:ASP121 3.3 27.0 1.0 C C:PHE123 3.3 32.2 1.0 CG C:ASP121 3.3 25.9 1.0 ND2 C:ASN125 3.6 35.9 1.0 O C:GLY99 3.9 22.6 1.0 CB C:ASN125 4.0 31.7 1.0 CG C:ASP129 4.0 28.0 1.0 OD1 C:ASP81 4.0 23.6 1.0 N C:ASN125 4.1 28.9 1.0 CA C:PHE123 4.2 30.4 1.0 OD1 C:ASP129 4.2 25.8 1.0 CA C:GLY99 4.3 24.0 1.0 CB C:PHE123 4.3 31.3 1.0 N C:TYR124 4.3 32.4 1.0 N C:PHE123 4.3 29.0 1.0 CD2 C:PHE123 4.4 32.4 1.0 NE1 C:TRP128 4.5 24.2 1.0 O C:ASP81 4.5 25.5 1.0 C C:TYR124 4.6 30.5 1.0 C C:GLY99 4.6 23.7 1.0 CA C:TYR124 4.6 32.5 1.0 CA C:ASN125 4.7 30.7 1.0 O C:HOH491 4.7 30.0 1.0 CB C:ASP121 4.8 24.4 1.0 MN C:MN459 4.9 30.4 1.0 CG C:PHE123 4.9 34.0 1.0

Calcium binding site 3 out of 4 in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca688 b:36.9 occ:1.00 O E:HOH713 1.5 37.1 1.0 O E:HOH712 1.5 32.1 1.0 OD1 E:ASN125 1.7 21.8 1.0 O E:PHE123 2.2 20.3 1.0 OD1 E:ASP121 2.6 17.2 1.0 OD2 E:ASP129 2.8 20.0 1.0 CG E:ASN125 3.0 21.2 1.0 C E:PHE123 3.4 19.6 1.0 CG E:ASP121 3.4 14.3 1.0 OD2 E:ASP121 3.5 15.6 1.0 CG E:ASP129 3.9 21.4 1.0 ND2 E:ASN125 3.9 20.3 1.0 OD1 E:ASP81 4.0 17.5 1.0 CB E:ASN125 4.0 21.5 1.0 N E:ASN125 4.1 22.2 1.0 CA E:PHE123 4.2 20.7 1.0 CB E:PHE123 4.2 21.1 1.0 O E:GLY99 4.3 17.2 1.0 OD1 E:ASP129 4.3 19.6 1.0 N E:PHE123 4.4 19.8 1.0 O E:ASP81 4.4 18.0 1.0 N E:TYR124 4.4 19.7 1.0 CA E:GLY99 4.5 17.0 1.0 NE1 E:TRP128 4.5 16.7 1.0 CD1 E:PHE123 4.6 23.4 1.0 C E:TYR124 4.7 23.1 1.0 CA E:ASN125 4.7 22.4 1.0 CA E:TYR124 4.7 21.9 1.0 O E:HOH714 4.7 34.7 1.0 CB E:ASP121 4.8 13.8 1.0 MN E:MN689 4.8 27.5 1.0 C E:GLY99 4.9 16.5 1.0 CG E:PHE123 4.9 22.8 1.0 O4 E:MMA182 4.9 20.8 1.0

Calcium binding site 4 out of 4 in the Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide- Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca918 b:11.4 occ:1.00 O G:HOH946 1.6 40.8 1.0 O G:HOH947 1.6 34.0 1.0 O G:PHE123 1.9 19.5 1.0 OD1 G:ASN125 2.0 19.1 1.0 OD2 G:ASP129 2.5 19.5 1.0 OD1 G:ASP121 2.6 17.1 1.0 OD2 G:ASP121 2.8 14.6 1.0 CG G:ASP121 3.1 13.8 1.0 C G:PHE123 3.2 18.1 1.0 CG G:ASN125 3.2 18.9 1.0 CG G:ASP129 3.6 21.5 1.0 OD1 G:ASP129 3.9 20.7 1.0 N G:ASN125 4.0 19.7 1.0 CA G:PHE123 4.1 17.1 1.0 ND2 G:ASN125 4.1 16.9 1.0 CB G:ASN125 4.2 19.2 1.0 N G:PHE123 4.2 16.4 1.0 CB G:PHE123 4.2 14.8 1.0 N G:TYR124 4.2 18.6 1.0 OD1 G:ASP81 4.3 18.9 1.0 O G:HOH948 4.3 23.4 1.0 O G:GLY99 4.4 12.7 1.0 MN G:MN919 4.5 19.8 1.0 CA G:TYR124 4.5 21.2 1.0 NE1 G:TRP128 4.5 16.0 1.0 O G:ASP81 4.5 12.1 1.0 CB G:ASP121 4.6 12.9 1.0 C G:TYR124 4.6 21.1 1.0 CD2 G:PHE123 4.6 17.2 1.0 CA G:ASN125 4.7 21.4 1.0 CA G:GLY99 4.7 12.9 1.0 CB G:ASP129 4.9 22.7 1.0 CG G:PHE123 5.0 17.3 1.0

Y.Bourne, A.Roussel, M.Frey, P.Rouge, J.C.Fontecilla-Camps, C.Cambillau. Three-Dimensional Structures of Complexes of Lathyrus Ochrus Isolectin I with Glucose and Mannose: Fine Specificity of the Monosaccharide-Binding Site. Proteins V. 8 365 1990.
ISSN: ISSN 0887-3585
PubMed: 2091026
DOI: 10.1002/PROT.340080410