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Calcium in PDB 1lww: Borohydride-Trapped HOGG1 Intermediate Structure Co- Crystallized with 8-Bromoguanine

Protein crystallography data

The structure of Borohydride-Trapped HOGG1 Intermediate Structure Co- Crystallized with 8-Bromoguanine, PDB code: 1lww was solved by J.C.Fromme, S.D.Bruner, W.Yang, M.Karplus, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.10
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.174, 92.174, 211.887, 90.00, 90.00, 120.00
R / Rfree (%) 23.6 / 25.7

Other elements in 1lww:

The structure of Borohydride-Trapped HOGG1 Intermediate Structure Co- Crystallized with 8-Bromoguanine also contains other interesting chemical elements:

Bromine (Br) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Borohydride-Trapped HOGG1 Intermediate Structure Co- Crystallized with 8-Bromoguanine (pdb code 1lww). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Borohydride-Trapped HOGG1 Intermediate Structure Co- Crystallized with 8-Bromoguanine, PDB code: 1lww:

Calcium binding site 1 out of 1 in 1lww

Go back to Calcium Binding Sites List in 1lww
Calcium binding site 1 out of 1 in the Borohydride-Trapped HOGG1 Intermediate Structure Co- Crystallized with 8-Bromoguanine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Borohydride-Trapped HOGG1 Intermediate Structure Co- Crystallized with 8-Bromoguanine within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca216

b:38.4
occ:1.00
O E:HOH6 2.7 27.6 1.0
O E:HOH209 3.0 48.6 1.0
OP2 E:DA22 4.1 36.8 1.0
OP2 E:DG24 4.3 27.4 1.0
N7 E:DG24 4.3 33.4 1.0
ND2 A:ASN149 4.4 32.8 1.0
C8 E:DA22 4.4 29.7 1.0
N7 E:DA22 4.5 29.2 1.0
OP1 E:DG24 4.8 26.8 1.0
C8 E:DG24 4.9 31.6 1.0
O A:HOH389 4.9 27.9 1.0
O A:HOH456 5.0 49.6 1.0

Reference:

J.C.Fromme, S.D.Bruner, W.Yang, M.Karplus, G.L.Verdine. Product-Assisted Catalysis in Base Excision Dna Repair Nat.Struct.Biol. V. 10 204 2003.
ISSN: ISSN 1072-8368
PubMed: 12592398
DOI: 10.1038/NSB902
Page generated: Sat Dec 12 03:06:07 2020

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