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Calcium in PDB 1mnc: Structure of Human Neutrophil Collagenase Reveals Large S1' Specificity Pocket

Enzymatic activity of Structure of Human Neutrophil Collagenase Reveals Large S1' Specificity Pocket

All present enzymatic activity of Structure of Human Neutrophil Collagenase Reveals Large S1' Specificity Pocket:
3.4.24.7;

Protein crystallography data

The structure of Structure of Human Neutrophil Collagenase Reveals Large S1' Specificity Pocket, PDB code: 1mnc was solved by T.Stams, J.C.Spurlino, D.L.Smith, B.Rubin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 34.920, 61.280, 68.250, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1mnc:

The structure of Structure of Human Neutrophil Collagenase Reveals Large S1' Specificity Pocket also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Human Neutrophil Collagenase Reveals Large S1' Specificity Pocket (pdb code 1mnc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Human Neutrophil Collagenase Reveals Large S1' Specificity Pocket, PDB code: 1mnc:

Calcium binding site 1 out of 1 in 1mnc

Go back to Calcium Binding Sites List in 1mnc
Calcium binding site 1 out of 1 in the Structure of Human Neutrophil Collagenase Reveals Large S1' Specificity Pocket


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Human Neutrophil Collagenase Reveals Large S1' Specificity Pocket within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca283

b:8.8
occ:1.00
 OD2 A:ASP198 2.3 7.6 1.0
O A:ILE180 2.3 7.0 1.0
OE2 A:GLU201 2.3 7.9 1.0
OD1 A:ASP175 2.4 9.4 1.0
O A:GLY176 2.4 8.8 1.0
O A:ASN178 2.4 11.8 1.0
CG A:ASP198 3.2 2.8 1.0
C A:ILE180 3.4 9.2 1.0
CG A:ASP175 3.5 6.4 1.0
CD A:GLU201 3.6 5.4 1.0
C A:GLY176 3.6 6.5 1.0
C A:ASN178 3.6 6.6 1.0
OD2 A:ASP175 3.9 7.4 1.0
CB A:ASP198 3.9 0.5 1.0
N A:ILE180 3.9 9.8 1.0
N A:ASN178 4.0 7.4 1.0
C A:PRO177 4.1 8.1 1.0
OD1 A:ASP198 4.1 7.4 1.0
OE1 A:GLU201 4.1 3.4 1.0
N A:GLY176 4.1 7.5 1.0
CA A:ILE180 4.3 10.2 1.0
C A:GLY179 4.3 8.1 1.0
C A:ASP175 4.3 6.9 1.0
CA A:ASN178 4.3 6.4 1.0
O A:PRO177 4.4 10.5 1.0
N A:ASP175 4.4 2.8 1.0
N A:LEU181 4.4 5.7 1.0
O A:HOH68 4.4 8.3 1.0
CA A:LEU181 4.4 3.5 1.0
N A:PRO177 4.5 7.3 1.0
CA A:GLY176 4.5 2.9 1.0
CA A:PRO177 4.5 7.6 1.0
CG A:GLU201 4.5 5.7 1.0
N A:GLY179 4.5 7.0 1.0
CA A:GLY179 4.7 6.6 1.0
CA A:ASP175 4.7 5.3 1.0
O A:ASP175 4.7 9.6 1.0
CB A:ASP175 4.7 6.5 1.0
CB A:ILE180 4.8 10.1 1.0
CD2 A:LEU181 4.9 2.5 1.0
O A:GLY179 4.9 5.3 1.0

Reference:

T.Stams, J.C.Spurlino, D.L.Smith, R.C.Wahl, T.F.Ho, M.W.Qoronfleh, T.M.Banks, B.Rubin. Structure of Human Neutrophil Collagenase Reveals Large S1' Specificity Pocket. Nat.Struct.Biol. V. 1 119 1994.
ISSN: ISSN 1072-8368
PubMed: 7656015
DOI: 10.1038/NSB0294-119
Page generated: Thu Jul 11 12:34:28 2024

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