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Calcium in PDB 1mve: Crystal Structure of A Natural Circularly-Permutated Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes

Enzymatic activity of Crystal Structure of A Natural Circularly-Permutated Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes

All present enzymatic activity of Crystal Structure of A Natural Circularly-Permutated Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes:
3.2.1.73;

Protein crystallography data

The structure of Crystal Structure of A Natural Circularly-Permutated Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes, PDB code: 1mve was solved by L.-C.Tsai, L.-F.Shyur, S.-H.Lee, S.-S.Lin, H.S.Yuan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.93 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.850, 73.350, 73.710, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 23.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Natural Circularly-Permutated Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes (pdb code 1mve). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Natural Circularly-Permutated Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes, PDB code: 1mve:

Calcium binding site 1 out of 1 in 1mve

Go back to Calcium Binding Sites List in 1mve
Calcium binding site 1 out of 1 in the Crystal Structure of A Natural Circularly-Permutated Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Natural Circularly-Permutated Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca400

b:10.8
occ:1.00
 O A:GLY222 2.3 13.4 1.0
O A:HOH537 2.4 15.1 1.0
OD1 A:ASN164 2.4 12.6 1.0
O A:ASN164 2.4 8.1 1.0
O A:HOH566 2.5 13.9 1.0
O A:HOH567 2.5 14.4 1.0
O A:ASN189 2.5 11.2 1.0
C A:GLY222 3.4 13.8 1.0
C A:ASN164 3.4 8.1 1.0
C A:ASN189 3.5 9.9 1.0
CG A:ASN164 3.5 11.4 1.0
CA A:GLY222 3.9 14.2 1.0
CA A:ASN164 3.9 8.6 1.0
CA A:ASN189 4.1 11.7 1.0
CB A:ASN189 4.2 14.6 1.0
CB A:ASN164 4.3 9.2 1.0
O A:HOH724 4.4 35.7 1.0
ND2 A:ASN164 4.5 12.3 1.0
N A:TRP165 4.6 9.3 1.0
N A:MSE223 4.6 11.4 1.0
OD1 A:ASP191 4.6 16.3 1.0
N A:PHE190 4.7 10.6 1.0
OD1 A:ASN189 4.7 21.7 1.0
O A:HOH515 4.7 21.9 1.0
O A:HOH708 4.8 31.2 1.0
CB A:TRP165 4.8 9.7 1.0
CB A:PHE190 4.9 11.1 1.0
CA A:MSE223 4.9 13.9 1.0
CG A:ASN189 4.9 18.5 1.0
CA A:TRP165 5.0 9.6 1.0

Reference:

L.C.Tsai, L.F.Shyur, S.H.Lee, S.S.Lin, H.S.Yuan. Crystal Structure of A Natural Circularly Permuted Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes. J.Mol.Biol. V. 330 607 2003.
ISSN: ISSN 0022-2836
PubMed: 12842475
DOI: 10.1016/S0022-2836(03)00630-2
Page generated: Thu Jul 11 12:37:19 2024

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