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Calcium in PDB 1mxe: Structure of the Complex of Calmodulin with the Target Sequence of Camki

Enzymatic activity of Structure of the Complex of Calmodulin with the Target Sequence of Camki

All present enzymatic activity of Structure of the Complex of Calmodulin with the Target Sequence of Camki:
2.7.1.123;

Protein crystallography data

The structure of Structure of the Complex of Calmodulin with the Target Sequence of Camki, PDB code: 1mxe was solved by J.A.Clapperton, S.R.Martin, S.J.Smerdon, S.J.Gamblin, P.M.Bayley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.75 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.712, 69.581, 75.344, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 22.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the Complex of Calmodulin with the Target Sequence of Camki (pdb code 1mxe). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Structure of the Complex of Calmodulin with the Target Sequence of Camki, PDB code: 1mxe:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 1mxe

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Calcium binding site 1 out of 8 in the Structure of the Complex of Calmodulin with the Target Sequence of Camki


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Complex of Calmodulin with the Target Sequence of Camki within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca505

b:24.5
occ:1.00
OD2 A:ASP93 2.3 11.8 1.0
O A:PHE99 2.3 10.8 1.0
O A:HOH516 2.3 28.7 1.0
OD2 A:ASP95 2.3 15.4 1.0
OE2 A:GLU104 2.5 12.9 1.0
OD1 A:ASN97 2.5 12.8 1.0
OE1 A:GLU104 2.5 9.8 1.0
CD A:GLU104 2.8 9.9 1.0
CG A:ASP95 3.3 16.2 1.0
CG A:ASN97 3.4 13.6 1.0
CG A:ASP93 3.4 13.2 1.0
C A:PHE99 3.5 10.4 1.0
OD1 A:ASP95 3.6 16.2 1.0
ND2 A:ASN97 4.0 12.1 1.0
N A:ASN97 4.1 15.2 1.0
N A:PHE99 4.2 11.4 1.0
OD1 A:ASP93 4.2 12.9 1.0
CA A:ASP93 4.2 12.9 1.0
N A:ASP95 4.2 16.1 1.0
CG A:GLU104 4.3 10.8 1.0
CB A:ASP93 4.3 12.3 1.0
CB A:ASN97 4.4 14.1 1.0
CA A:PHE99 4.4 10.4 1.0
C A:ASP93 4.4 13.9 1.0
N A:ILE100 4.5 8.7 1.0
CA A:ILE100 4.5 8.9 1.0
N A:GLY96 4.5 16.4 1.0
CB A:ASP95 4.5 16.0 1.0
N A:LYS94 4.5 14.4 1.0
N A:SER101 4.6 9.4 1.0
CA A:ASP95 4.7 16.4 1.0
CA A:ASN97 4.7 14.1 1.0
CB A:PHE99 4.8 10.8 1.0
C A:ASP95 4.8 16.4 1.0
N A:GLY98 4.9 12.7 1.0
O A:ASP93 4.9 14.8 1.0

Calcium binding site 2 out of 8 in 1mxe

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Calcium binding site 2 out of 8 in the Structure of the Complex of Calmodulin with the Target Sequence of Camki


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Complex of Calmodulin with the Target Sequence of Camki within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca506

b:26.0
occ:1.00
OD1 A:ASP129 2.3 8.6 1.0
OD2 A:ASP131 2.3 10.1 1.0
O A:HOH515 2.3 32.4 1.0
O A:GLN135 2.4 9.9 1.0
OD1 A:ASP133 2.4 10.4 1.0
OE1 A:GLU140 2.5 9.1 1.0
OE2 A:GLU140 2.6 10.2 1.0
CD A:GLU140 2.9 11.0 1.0
CG A:ASP131 3.2 11.7 1.0
CG A:ASP133 3.3 12.9 1.0
CG A:ASP129 3.4 10.8 1.0
C A:GLN135 3.5 10.0 1.0
OD1 A:ASP131 3.6 12.5 1.0
OD2 A:ASP133 3.7 13.6 1.0
N A:ASP133 4.1 12.4 1.0
CA A:ASP129 4.1 10.1 1.0
N A:GLN135 4.2 10.8 1.0
OD2 A:ASP129 4.2 10.8 1.0
CB A:ASP129 4.2 9.8 1.0
N A:ASP131 4.3 10.7 1.0
CA A:VAL136 4.4 8.4 1.0
N A:VAL136 4.4 8.6 1.0
CG A:GLU140 4.4 9.2 1.0
CB A:ASP133 4.4 12.9 1.0
N A:ASN137 4.4 7.8 1.0
N A:GLY132 4.4 12.0 1.0
CB A:ASP131 4.4 11.5 1.0
C A:ASP129 4.5 10.7 1.0
CA A:GLN135 4.5 10.9 1.0
CA A:ASP131 4.6 11.3 1.0
CA A:ASP133 4.6 12.8 1.0
N A:GLY134 4.7 11.9 1.0
N A:ILE130 4.7 10.5 1.0
C A:ASP131 4.8 11.8 1.0
CG A:GLN135 4.8 14.6 1.0
C A:VAL136 4.9 8.8 1.0
C A:ASP133 4.9 12.7 1.0
CG A:ASN137 4.9 8.7 1.0
O A:ASP129 5.0 11.2 1.0

Calcium binding site 3 out of 8 in 1mxe

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Calcium binding site 3 out of 8 in the Structure of the Complex of Calmodulin with the Target Sequence of Camki


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the Complex of Calmodulin with the Target Sequence of Camki within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca507

b:27.9
occ:1.00
O A:HOH625 2.0 40.0 1.0
OD2 A:ASP56 2.3 13.3 1.0
OD1 A:ASP58 2.4 10.4 1.0
OD1 A:ASN60 2.4 13.1 1.0
O A:THR62 2.4 14.2 1.0
OE1 A:GLU67 2.5 13.8 1.0
OE2 A:GLU67 2.6 11.7 1.0
CD A:GLU67 2.9 13.0 1.0
CG A:ASN60 3.3 12.9 1.0
CG A:ASP56 3.4 15.8 1.0
CG A:ASP58 3.4 10.3 1.0
C A:THR62 3.6 13.5 1.0
ND2 A:ASN60 3.8 14.8 1.0
OD2 A:ASP58 3.8 11.4 1.0
OD1 A:ASP56 4.2 15.7 1.0
N A:ASP58 4.3 10.0 1.0
N A:THR62 4.3 12.5 1.0
CA A:ASP56 4.3 16.2 1.0
N A:ASN60 4.3 10.3 1.0
CB A:ASP56 4.3 15.8 1.0
CG A:GLU67 4.4 12.0 1.0
CA A:ILE63 4.4 12.7 1.0
N A:ILE63 4.5 13.0 1.0
CB A:ASN60 4.5 12.0 1.0
N A:ASP64 4.5 12.6 1.0
CA A:THR62 4.5 13.5 1.0
C A:ASP56 4.5 15.6 1.0
CB A:ASP58 4.6 9.2 1.0
N A:ALA57 4.7 13.7 1.0
OG1 A:THR62 4.7 14.4 1.0
N A:GLY59 4.7 9.3 1.0
CA A:ASP58 4.7 9.1 1.0
CA A:ASN60 4.8 11.8 1.0
O A:HOH595 4.8 34.7 1.0
N A:GLY61 4.9 12.8 1.0
C A:ILE63 4.9 12.8 1.0
C A:ASP58 4.9 9.2 1.0
CG A:ASP64 5.0 14.3 1.0

Calcium binding site 4 out of 8 in 1mxe

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Calcium binding site 4 out of 8 in the Structure of the Complex of Calmodulin with the Target Sequence of Camki


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of the Complex of Calmodulin with the Target Sequence of Camki within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca508

b:29.4
occ:1.00
O A:THR26 2.3 14.9 1.0
OD1 A:ASP24 2.4 18.9 1.0
OD1 A:ASP22 2.4 14.5 1.0
OD1 A:ASP20 2.4 13.6 1.0
O A:HOH518 2.4 34.3 1.0
OE2 A:GLU31 2.5 13.2 1.0
OE1 A:GLU31 2.6 12.5 1.0
CD A:GLU31 2.9 13.4 1.0
CG A:ASP24 3.3 18.5 1.0
CG A:ASP22 3.4 16.3 1.0
C A:THR26 3.5 15.1 1.0
CG A:ASP20 3.5 14.4 1.0
OD2 A:ASP22 3.7 17.5 1.0
OD2 A:ASP24 3.9 19.0 1.0
OG1 A:THR26 4.0 19.0 1.0
N A:THR26 4.0 15.4 1.0
CA A:ASP20 4.1 13.9 1.0
N A:ASP24 4.2 16.8 1.0
CB A:ASP20 4.3 13.9 1.0
CA A:THR26 4.3 15.9 1.0
CB A:ASP24 4.3 17.4 1.0
OD2 A:ASP20 4.3 14.0 1.0
CG A:GLU31 4.4 13.3 1.0
N A:ILE27 4.5 13.5 1.0
C A:ASP20 4.5 14.2 1.0
N A:ASP22 4.5 15.9 1.0
CA A:ASP24 4.6 17.3 1.0
CA A:ILE27 4.6 13.4 1.0
CB A:ASP22 4.7 15.5 1.0
N A:GLY25 4.7 16.6 1.0
N A:GLY23 4.7 15.7 1.0
C A:ASP24 4.8 17.1 1.0
O A:HOH567 4.8 33.2 1.0
N A:LYS21 4.8 14.9 1.0
CB A:THR26 4.8 16.8 1.0
CG2 A:THR28 4.8 14.4 1.0
CA A:ASP22 4.9 15.7 1.0
O A:HOH589 4.9 39.8 1.0
N A:THR28 5.0 13.6 1.0

Calcium binding site 5 out of 8 in 1mxe

Go back to Calcium Binding Sites List in 1mxe
Calcium binding site 5 out of 8 in the Structure of the Complex of Calmodulin with the Target Sequence of Camki


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of the Complex of Calmodulin with the Target Sequence of Camki within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:32.2
occ:1.00
OD1 B:ASP129 2.2 15.2 1.0
OD2 B:ASP131 2.4 18.4 1.0
OD2 B:ASP133 2.4 18.8 1.0
O B:GLN135 2.4 15.6 1.0
O B:HOH575 2.4 40.0 1.0
OE2 B:GLU140 2.5 12.8 1.0
OE1 B:GLU140 2.5 13.9 1.0
CD B:GLU140 2.9 13.8 1.0
CG B:ASP131 3.2 19.2 1.0
CG B:ASP133 3.3 18.4 1.0
CG B:ASP129 3.4 17.1 1.0
OD1 B:ASP131 3.5 20.9 1.0
C B:GLN135 3.6 15.8 1.0
OD1 B:ASP133 3.8 17.9 1.0
CA B:ASP129 4.2 17.4 1.0
OD2 B:ASP129 4.2 17.7 1.0
N B:ASP133 4.2 18.2 1.0
CB B:ASP129 4.2 17.2 1.0
N B:ASP131 4.2 18.7 1.0
N B:GLN135 4.3 16.6 1.0
CA B:VAL136 4.4 15.2 1.0
CG B:GLU140 4.4 13.9 1.0
N B:ASN137 4.4 15.7 1.0
CB B:ASP131 4.4 19.1 1.0
N B:VAL136 4.4 14.9 1.0
N B:GLY132 4.5 18.8 1.0
CB B:ASP133 4.5 18.1 1.0
CA B:GLN135 4.5 16.3 1.0
C B:ASP129 4.6 17.9 1.0
N B:ILE130 4.6 18.3 1.0
CA B:ASP131 4.6 18.9 1.0
CA B:ASP133 4.8 18.1 1.0
C B:ASP131 4.8 19.0 1.0
N B:GLY134 4.8 17.2 1.0
ND2 B:ASN137 4.9 16.1 1.0
C B:VAL136 4.9 15.7 1.0
CG B:ASN137 4.9 15.9 1.0

Calcium binding site 6 out of 8 in 1mxe

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Calcium binding site 6 out of 8 in the Structure of the Complex of Calmodulin with the Target Sequence of Camki


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of the Complex of Calmodulin with the Target Sequence of Camki within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca502

b:31.4
occ:1.00
OD2 B:ASP56 2.3 17.5 1.0
O B:HOH562 2.3 39.8 1.0
OD1 B:ASP58 2.4 15.8 1.0
OD1 B:ASN60 2.4 14.6 1.0
O B:THR62 2.5 14.1 1.0
OE1 B:GLU67 2.5 14.4 1.0
OE2 B:GLU67 2.6 13.6 1.0
O B:HOH540 2.9 44.0 1.0
CD B:GLU67 2.9 14.6 1.0
CG B:ASN60 3.3 14.6 1.0
CG B:ASP56 3.4 18.8 1.0
CG B:ASP58 3.4 15.9 1.0
C B:THR62 3.6 14.5 1.0
OD2 B:ASP58 3.7 15.8 1.0
ND2 B:ASN60 3.9 14.3 1.0
OD1 B:ASP56 4.2 19.7 1.0
N B:ASN60 4.3 14.6 1.0
CA B:ASP56 4.3 19.0 1.0
CB B:ASP56 4.3 19.0 1.0
N B:ASP58 4.4 15.9 1.0
N B:ASP64 4.4 13.9 1.0
N B:THR62 4.4 14.6 1.0
CG B:GLU67 4.4 14.2 1.0
CA B:ILE63 4.4 14.2 1.0
CB B:ASN60 4.4 14.7 1.0
N B:ILE63 4.5 13.8 1.0
OG1 B:THR62 4.6 14.4 1.0
C B:ASP56 4.6 18.7 1.0
CA B:THR62 4.6 14.5 1.0
CB B:ASP58 4.7 15.4 1.0
N B:ALA57 4.7 17.9 1.0
CA B:ASN60 4.7 14.4 1.0
CG B:ASP64 4.8 15.7 1.0
C B:ILE63 4.8 14.1 1.0
CA B:ASP58 4.9 15.3 1.0
N B:GLY59 4.9 14.5 1.0
OD2 B:ASP64 4.9 17.7 1.0
OD1 B:ASP64 4.9 16.8 1.0
N B:GLY61 4.9 14.5 1.0

Calcium binding site 7 out of 8 in 1mxe

Go back to Calcium Binding Sites List in 1mxe
Calcium binding site 7 out of 8 in the Structure of the Complex of Calmodulin with the Target Sequence of Camki


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of the Complex of Calmodulin with the Target Sequence of Camki within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca503

b:29.2
occ:1.00
O B:THR26 2.3 15.1 1.0
OD1 B:ASP20 2.3 14.8 1.0
OD1 B:ASP22 2.4 16.6 1.0
O B:HOH507 2.4 37.3 1.0
OD1 B:ASP24 2.4 16.3 1.0
OE2 B:GLU31 2.4 14.2 1.0
OE1 B:GLU31 2.5 14.5 1.0
CD B:GLU31 2.8 14.6 1.0
CG B:ASP24 3.3 17.0 1.0
CG B:ASP22 3.4 17.5 1.0
CG B:ASP20 3.5 15.4 1.0
C B:THR26 3.5 15.2 1.0
OD2 B:ASP22 3.7 17.4 1.0
OD2 B:ASP24 3.8 18.0 1.0
OG1 B:THR26 3.9 19.3 1.0
CA B:ASP20 4.1 16.1 1.0
N B:THR26 4.1 15.5 1.0
N B:ASP24 4.2 15.8 1.0
CB B:ASP20 4.2 16.1 1.0
OD2 B:ASP20 4.3 15.9 1.0
CA B:THR26 4.3 15.8 1.0
CG B:GLU31 4.3 15.0 1.0
CB B:ASP24 4.4 16.0 1.0
N B:ILE27 4.5 13.5 1.0
C B:ASP20 4.5 16.6 1.0
N B:ASP22 4.5 17.6 1.0
CA B:ILE27 4.6 13.8 1.0
CA B:ASP24 4.7 16.0 1.0
CB B:ASP22 4.7 17.7 1.0
N B:GLY23 4.7 17.0 1.0
O B:HOH509 4.8 33.5 1.0
CG2 B:THR28 4.8 14.5 1.0
CB B:THR26 4.8 16.7 1.0
N B:LYS21 4.8 17.0 1.0
N B:GLY25 4.8 15.5 1.0
CA B:ASP22 4.9 17.4 1.0
C B:ASP24 4.9 16.0 1.0
N B:THR28 5.0 14.0 1.0
O B:HOH524 5.0 37.3 1.0

Calcium binding site 8 out of 8 in 1mxe

Go back to Calcium Binding Sites List in 1mxe
Calcium binding site 8 out of 8 in the Structure of the Complex of Calmodulin with the Target Sequence of Camki


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of the Complex of Calmodulin with the Target Sequence of Camki within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca504

b:29.4
occ:1.00
OD2 B:ASP93 2.2 15.8 1.0
O B:HOH523 2.3 34.2 1.0
O B:PHE99 2.3 17.0 1.0
OD1 B:ASN97 2.4 15.0 1.0
OD1 B:ASP95 2.4 17.4 1.0
OE2 B:GLU104 2.5 16.8 1.0
OE1 B:GLU104 2.5 16.1 1.0
CD B:GLU104 2.9 16.0 1.0
CG B:ASN97 3.3 14.2 1.0
CG B:ASP93 3.4 17.6 1.0
CG B:ASP95 3.4 17.4 1.0
C B:PHE99 3.5 16.3 1.0
OD2 B:ASP95 3.8 18.2 1.0
N B:ASN97 4.0 13.4 1.0
ND2 B:ASN97 4.0 15.4 1.0
CA B:ASP93 4.2 18.8 1.0
N B:PHE99 4.2 14.7 1.0
OD1 B:ASP93 4.2 15.9 1.0
CB B:ASP93 4.3 18.3 1.0
CB B:ASN97 4.3 13.6 1.0
CA B:PHE99 4.4 15.7 1.0
CG B:GLU104 4.4 15.9 1.0
N B:ASP95 4.4 18.4 1.0
C B:ASP93 4.4 18.8 1.0
N B:GLY96 4.4 15.8 1.0
N B:ILE100 4.5 16.0 1.0
CA B:ASN97 4.5 13.4 1.0
CA B:ILE100 4.6 16.4 1.0
CB B:ASP95 4.6 17.8 1.0
O B:HOH518 4.6 37.6 1.0
N B:SER101 4.7 16.3 1.0
N B:LYS94 4.7 19.6 1.0
CB B:PHE99 4.7 16.1 1.0
N B:GLY98 4.8 13.4 1.0
CA B:ASP95 4.8 17.7 1.0
O B:ASP93 4.8 18.6 1.0
C B:ASN97 4.8 13.3 1.0
O B:HOH553 4.9 45.8 1.0
C B:ASP95 4.9 16.8 1.0

Reference:

J.A.Clapperton, S.R.Martin, S.J.Smerdon, S.J.Gamblin, P.M.Bayley. Structure of the Complex of Calmodulin with the Target Sequence of Calmodulin-Dependent Protein Kinase I: Studies of the Kinase Activation Mechanism Biochemistry V. 41 14669 2002.
ISSN: ISSN 0006-2960
PubMed: 12475216
DOI: 10.1021/BI026660T
Page generated: Sat Dec 12 03:07:43 2020

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