Atomistry » Calcium » PDB 1n7s-1nm9 » 1nbw
Atomistry »
  Calcium »
    PDB 1n7s-1nm9 »
      1nbw »

Calcium in PDB 1nbw: Glycerol Dehydratase Reactivase

Protein crystallography data

The structure of Glycerol Dehydratase Reactivase, PDB code: 1nbw was solved by D.-I.Liao, L.Reiss, I.Turner Jr., G.Dotson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 110.000, 110.000, 332.200, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 27.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Glycerol Dehydratase Reactivase (pdb code 1nbw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Glycerol Dehydratase Reactivase, PDB code: 1nbw:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1nbw

Go back to Calcium Binding Sites List in 1nbw
Calcium binding site 1 out of 2 in the Glycerol Dehydratase Reactivase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Glycerol Dehydratase Reactivase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca650

b:26.1
occ:1.00
OD2 C:ASP185 2.1 39.0 1.0
O C:THR104 2.3 25.9 1.0
OG1 C:THR104 2.3 28.2 1.0
OD1 C:ASP168 2.3 27.9 1.0
O C:HOH757 2.4 28.9 1.0
OE2 D:GLU31 2.5 31.8 1.0
CG C:ASP185 3.1 37.2 1.0
C C:THR104 3.2 24.8 1.0
CB C:THR104 3.3 27.1 1.0
CG C:ASP168 3.4 29.1 1.0
CD D:GLU31 3.4 31.8 1.0
CA C:THR104 3.7 26.7 1.0
CG D:GLU31 3.7 30.4 1.0
CB C:ASP185 3.8 30.9 1.0
OD1 C:ASP185 4.1 41.4 1.0
OD2 C:ASP168 4.1 31.3 1.0
N C:THR104 4.2 28.2 1.0
O C:ASP168 4.2 28.4 1.0
C C:ASP168 4.2 27.7 1.0
N C:GLY170 4.2 25.6 1.0
N C:PRO105 4.3 23.5 1.0
CA C:ASP168 4.3 27.3 1.0
CB C:ASP168 4.5 26.9 1.0
OE1 C:GLU186 4.5 35.2 1.0
CG2 C:VAL171 4.6 25.7 1.0
OE1 D:GLU31 4.6 33.7 1.0
CG2 C:THR104 4.6 25.2 1.0
N C:VAL171 4.6 24.5 1.0
N C:ASP169 4.7 28.4 1.0
CA C:GLY170 4.7 25.2 1.0
CA C:PRO105 4.7 22.7 1.0
CG C:GLU186 4.9 33.8 1.0
CD C:GLU186 4.9 36.3 1.0
O D:GLU31 5.0 27.1 1.0

Calcium binding site 2 out of 2 in 1nbw

Go back to Calcium Binding Sites List in 1nbw
Calcium binding site 2 out of 2 in the Glycerol Dehydratase Reactivase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Glycerol Dehydratase Reactivase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca650

b:20.7
occ:1.00
OD2 A:ASP185 2.0 28.9 1.0
OD1 A:ASP168 2.1 21.4 1.0
OE2 B:GLU31 2.2 20.0 1.0
OG1 A:THR104 2.3 19.8 1.0
O A:THR104 2.3 19.9 1.0
O A:HOH656 2.5 20.1 1.0
CG A:ASP185 3.2 27.8 1.0
C A:THR104 3.2 21.4 1.0
CD B:GLU31 3.2 19.8 1.0
CB A:THR104 3.2 23.2 1.0
CG A:ASP168 3.4 25.1 1.0
CG B:GLU31 3.6 19.2 1.0
CA A:THR104 3.7 23.6 1.0
CB A:ASP185 3.8 24.9 1.0
OD2 A:ASP168 4.1 21.3 1.0
OD1 A:ASP185 4.1 33.1 1.0
C A:ASP168 4.2 24.2 1.0
N A:GLY170 4.2 19.8 1.0
N A:THR104 4.2 26.6 1.0
O A:ASP168 4.2 25.3 1.0
OE1 A:GLU186 4.3 29.7 1.0
CA A:ASP168 4.3 25.3 1.0
N A:PRO105 4.3 21.4 1.0
OE1 B:GLU31 4.4 18.6 1.0
CB A:ASP168 4.4 23.8 1.0
N A:VAL171 4.5 20.0 1.0
CG2 A:THR104 4.6 20.2 1.0
CA A:GLY170 4.6 19.4 1.0
N A:ASP169 4.6 23.9 1.0
CA A:PRO105 4.7 20.1 1.0
CG2 A:VAL171 4.9 17.5 1.0
O B:GLU31 4.9 26.1 1.0

Reference:

D.-I.Liao, L.Reiss, I.Turner Jr., G.Dotson. Structure of Glycerol Dehydratase Reactivase: A New Type of Molecular Chaperone Structure V. 11 109 2003.
ISSN: ISSN 0969-2126
PubMed: 12517345
DOI: 10.1016/S0969-2126(02)00935-8
Page generated: Sat Dec 12 03:08:25 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy