Atomistry » Calcium » PDB 1n7s-1nm9 » 1ndu
Atomistry »
  Calcium »
    PDB 1n7s-1nm9 »
      1ndu »

Calcium in PDB 1ndu: Bacillus Lentus Subtilisin Variant S101G/V104N

Enzymatic activity of Bacillus Lentus Subtilisin Variant S101G/V104N

All present enzymatic activity of Bacillus Lentus Subtilisin Variant S101G/V104N:
3.4.21.62;

Protein crystallography data

The structure of Bacillus Lentus Subtilisin Variant S101G/V104N, PDB code: 1ndu was solved by X.Pan, R.Bott, C.E.Glatz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.750, 62.500, 75.600, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 22.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Bacillus Lentus Subtilisin Variant S101G/V104N (pdb code 1ndu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Bacillus Lentus Subtilisin Variant S101G/V104N, PDB code: 1ndu:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1ndu

Go back to Calcium Binding Sites List in 1ndu
Calcium binding site 1 out of 2 in the Bacillus Lentus Subtilisin Variant S101G/V104N


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Bacillus Lentus Subtilisin Variant S101G/V104N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca277

b:14.0
occ:1.00
O A:LEU75 2.3 12.5 1.0
OD1 A:ASP41 2.4 15.7 1.0
O A:ILE79 2.4 14.2 1.0
OE1 A:GLN2 2.4 12.4 1.0
O A:VAL81 2.4 14.8 1.0
OD1 A:ASN77 2.4 12.3 1.0
OD2 A:ASP41 2.5 14.7 1.0
CG A:ASP41 2.8 12.1 1.0
CG A:ASN77 3.4 15.2 1.0
CD A:GLN2 3.4 16.1 1.0
C A:LEU75 3.5 17.2 1.0
C A:ILE79 3.6 18.3 1.0
C A:VAL81 3.6 13.6 1.0
N A:VAL81 3.7 13.7 1.0
CG A:GLN2 3.9 18.9 1.0
ND2 A:ASN77 3.9 15.2 1.0
N A:ASN77 4.0 12.3 1.0
C A:GLY80 4.1 13.6 1.0
N A:LEU75 4.2 13.8 1.0
CB A:ASP41 4.3 15.4 1.0
CA A:VAL81 4.3 13.8 1.0
CA A:GLY80 4.3 12.2 1.0
CA A:LEU75 4.3 16.0 1.0
N A:ILE79 4.4 17.3 1.0
N A:GLY80 4.4 18.4 1.0
CG1 A:ILE79 4.4 16.9 1.0
N A:ASN76 4.5 16.5 1.0
CA A:ILE79 4.5 18.2 1.0
NE2 A:GLN2 4.6 13.4 1.0
CA A:ASN76 4.6 15.3 1.0
N A:LEU82 4.6 12.7 1.0
CB A:ASN77 4.6 15.4 1.0
CA A:ASN77 4.7 16.4 1.0
O A:ASN77 4.7 15.8 1.0
C A:ASN77 4.7 13.1 1.0
C A:ASN76 4.7 13.9 1.0
CB A:LEU75 4.7 18.1 1.0
C A:ALA74 4.7 15.0 1.0
CB A:GLN2 4.8 16.5 1.0
CA A:LEU82 4.8 10.8 1.0
O A:GLY80 4.9 15.8 1.0

Calcium binding site 2 out of 2 in 1ndu

Go back to Calcium Binding Sites List in 1ndu
Calcium binding site 2 out of 2 in the Bacillus Lentus Subtilisin Variant S101G/V104N


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Bacillus Lentus Subtilisin Variant S101G/V104N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca278

b:28.5
occ:0.92
O A:ALA169 2.3 14.2 1.0
O A:ALA174 2.3 14.6 1.0
O A:TYR171 2.3 14.6 1.0
O A:HOH375 2.5 17.8 0.9
O A:HOH376 2.6 30.4 0.8
C A:TYR171 3.4 14.8 1.0
C A:ALA169 3.5 15.9 1.0
C A:ALA174 3.5 13.1 1.0
C A:ARG170 3.7 15.2 1.0
N A:TYR171 3.9 13.0 1.0
O A:ARG170 3.9 22.8 1.0
O A:GLY195 4.0 21.2 1.0
O A:ALA172 4.1 17.2 1.0
N A:ALA174 4.1 13.2 1.0
CA A:ALA174 4.1 14.4 1.0
CA A:ARG170 4.1 15.1 1.0
OD2 A:ASP197 4.2 22.6 1.0
C A:ALA172 4.2 14.4 1.0
CA A:ALA172 4.2 17.3 1.0
CB A:ALA176 4.2 15.4 1.0
CB A:ALA174 4.2 14.8 1.0
N A:ALA172 4.2 13.8 1.0
N A:ARG170 4.3 11.5 1.0
CA A:TYR171 4.3 14.2 1.0
NH2 A:ARG247 4.3 26.5 1.0
N A:ALA176 4.4 13.0 1.0
CA A:ALA169 4.4 19.0 1.0
N A:MET175 4.5 13.7 1.0
O A:PRO168 4.7 17.6 1.0
C A:MET175 4.7 15.1 1.0
CA A:MET175 4.7 14.5 1.0
N A:ASN173 4.8 14.0 1.0
CA A:ALA176 4.9 13.6 1.0
C A:GLY195 4.9 21.8 1.0

Reference:

X.Pan, R.Bott, C.E.Glatz. Subtilisin Surface Properties and Crystal Growth Kinetics J.Cryst.Growth V. 254 492 2003.
ISSN: ISSN 0022-0248
DOI: 10.1016/S0022-0248(03)01178-3
Page generated: Sat Dec 12 03:08:33 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy