Calcium in PDB 1ng0: The Three-Dimensional Structure of Cocksfoot Mottle Virus at 2.7A Resolution

The structure of The Three-Dimensional Structure of Cocksfoot Mottle Virus at 2.7A Resolution, PDB code: 1ng0 was solved by K.Tars, A.Zeltins, L.Liljas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.70
Space group	P 21 21 21 7
Cell size a, b, c (Å), α, β, γ (°)	291.069, 537.250, 555.158, 90.00, 90.00, 90.00
R / Rfree (%)	28.1 / n/a

The binding sites of Calcium atom in the The Three-Dimensional Structure of Cocksfoot Mottle Virus at 2.7A Resolution (pdb code 1ng0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the The Three-Dimensional Structure of Cocksfoot Mottle Virus at 2.7A Resolution, PDB code: 1ng0:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the The Three-Dimensional Structure of Cocksfoot Mottle Virus at 2.7A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Three-Dimensional Structure of Cocksfoot Mottle Virus at 2.7A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1002 b:28.8 occ:1.00 OD1 A:ASP139 2.3 32.2 1.0 O B:LEU196 2.4 24.3 1.0 OD2 A:ASP136 2.4 28.4 1.0 O B:LEU253 2.4 38.1 1.0 OD1 B:ASN252 2.5 23.9 1.0 CG A:ASP139 3.2 30.9 1.0 CG A:ASP136 3.4 27.8 1.0 OD2 A:ASP139 3.4 31.3 1.0 C B:LEU196 3.6 23.9 1.0 C B:LEU253 3.6 37.3 1.0 CG B:ASN252 3.6 25.0 1.0 N B:LEU253 3.7 32.0 1.0 CB A:ASP136 3.7 25.1 1.0 O A:HOH1023 3.9 38.0 1.0 CA B:LEU253 4.3 34.5 1.0 C B:ASN252 4.3 29.4 1.0 N B:LEU196 4.4 21.7 1.0 ND2 B:ASN252 4.4 23.0 1.0 CA B:LEU196 4.4 22.1 1.0 CA B:ASN252 4.4 27.4 1.0 OD1 A:ASP136 4.5 28.6 1.0 CB B:LEU196 4.6 19.9 1.0 N B:SER197 4.6 25.7 1.0 CB A:ASP139 4.6 28.8 1.0 OXT B:LEU253 4.6 38.2 1.0 CB B:ASN252 4.6 26.3 1.0 O B:ALA106 4.7 21.6 1.0 CA B:SER197 4.7 28.7 1.0 N A:ASP139 4.8 26.1 1.0 CA A:ASP139 4.9 26.8 1.0 C B:LYS195 4.9 22.2 1.0 CZ3 B:TRP198 5.0 36.5 1.0 CE3 B:TRP198 5.0 34.0 1.0

Calcium binding site 2 out of 3 in the The Three-Dimensional Structure of Cocksfoot Mottle Virus at 2.7A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Three-Dimensional Structure of Cocksfoot Mottle Virus at 2.7A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1003 b:35.2 occ:1.00 OD1 B:ASP139 2.4 37.1 1.0 OD2 B:ASP136 2.4 34.3 1.0 OD1 C:ASN252 2.5 31.6 1.0 O C:LEU196 2.5 30.9 1.0 OXT C:LEU253 2.5 45.3 1.0 CG B:ASP139 3.2 34.8 1.0 OD2 B:ASP139 3.4 36.0 1.0 CG B:ASP136 3.4 32.1 1.0 CG C:ASN252 3.6 31.2 1.0 CB B:ASP136 3.6 28.8 1.0 C C:LEU196 3.6 30.4 1.0 N C:LEU253 3.6 37.8 1.0 C C:LEU253 3.7 43.6 1.0 N C:LEU196 4.3 26.4 1.0 CA C:LEU253 4.3 40.6 1.0 C C:ASN252 4.3 34.8 1.0 CA C:LEU196 4.3 28.1 1.0 ND2 C:ASN252 4.3 29.9 1.0 CA C:ASN252 4.4 33.1 1.0 CB C:LEU196 4.4 27.2 1.0 OD1 B:ASP136 4.5 33.3 1.0 O C:ALA106 4.5 21.1 1.0 CB C:ASN252 4.6 32.3 1.0 CB B:ASP139 4.6 31.2 1.0 N C:SER197 4.7 33.5 1.0 O C:LEU253 4.7 44.6 1.0 N B:ASP139 4.8 27.1 1.0 CA C:SER197 4.9 37.8 1.0 C C:LYS195 4.9 24.9 1.0 CA B:ASP139 5.0 28.1 1.0 CD1 C:TRP198 5.0 42.3 1.0

Calcium binding site 3 out of 3 in the The Three-Dimensional Structure of Cocksfoot Mottle Virus at 2.7A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Three-Dimensional Structure of Cocksfoot Mottle Virus at 2.7A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1001 b:26.8 occ:1.00 OD1 C:ASP139 2.3 33.1 1.0 O A:LEU196 2.4 24.9 1.0 O A:LEU253 2.4 37.4 1.0 OD2 C:ASP136 2.4 29.8 1.0 OD1 A:ASN252 2.4 25.0 1.0 CG C:ASP139 3.1 30.8 1.0 OD2 C:ASP139 3.3 31.9 1.0 CG C:ASP136 3.4 29.2 1.0 C A:LEU196 3.6 25.6 1.0 CG A:ASN252 3.6 24.0 1.0 C A:LEU253 3.6 36.1 1.0 N A:LEU253 3.6 30.6 1.0 CB C:ASP136 3.8 26.6 1.0 O C:HOH1054 4.0 33.2 1.0 CA A:LEU253 4.3 33.0 1.0 C A:ASN252 4.3 28.3 1.0 CA A:ASN252 4.3 25.8 1.0 ND2 A:ASN252 4.4 23.6 1.0 N A:LEU196 4.4 22.9 1.0 CA A:LEU196 4.4 23.5 1.0 CB C:ASP139 4.5 27.6 1.0 CB A:LEU196 4.5 21.5 1.0 OD1 C:ASP136 4.6 30.6 1.0 CB A:ASN252 4.6 24.3 1.0 OXT A:LEU253 4.6 37.6 1.0 N A:SER197 4.6 28.0 1.0 O A:ALA106 4.6 22.0 1.0 N C:ASP139 4.7 25.5 1.0 CD1 A:TRP198 4.7 42.1 1.0 CA A:SER197 4.7 30.9 1.0 NE1 A:TRP198 4.8 40.0 1.0 C A:LYS195 4.9 23.2 1.0 CA C:ASP139 4.9 25.7 1.0

K.Tars, A.Zeltins, L.Liljas. The Three-Dimensional Structure of Cocksfoot Mottle Virus at 2.7 A Resolution. Virology V. 310 287 2003.
ISSN: ISSN 0042-6822
PubMed: 12781716