Atomistry » Calcium » PDB 1n7s-1nm9 » 1nlv
Atomistry »
  Calcium »
    PDB 1n7s-1nm9 »
      1nlv »

Calcium in PDB 1nlv: Crystal Structure of Dictyostelium Discoideum Actin Complexed with Ca Atp and Human Gelsolin Segment 1

Protein crystallography data

The structure of Crystal Structure of Dictyostelium Discoideum Actin Complexed with Ca Atp and Human Gelsolin Segment 1, PDB code: 1nlv was solved by S.M.Vorobiev, S.Welti, J.Condeelis, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.00 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 178.446, 69.089, 56.570, 90.00, 104.50, 90.00
R / Rfree (%) 21 / 25.8

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Dictyostelium Discoideum Actin Complexed with Ca Atp and Human Gelsolin Segment 1 (pdb code 1nlv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Dictyostelium Discoideum Actin Complexed with Ca Atp and Human Gelsolin Segment 1, PDB code: 1nlv:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1nlv

Go back to Calcium Binding Sites List in 1nlv
Calcium binding site 1 out of 2 in the Crystal Structure of Dictyostelium Discoideum Actin Complexed with Ca Atp and Human Gelsolin Segment 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Dictyostelium Discoideum Actin Complexed with Ca Atp and Human Gelsolin Segment 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:26.1
occ:1.00
O2G A:ATP401 2.4 21.2 1.0
O A:HOH422 2.5 19.2 1.0
O A:HOH433 2.5 17.5 1.0
O1B A:ATP401 2.6 19.0 1.0
O A:HOH417 2.6 19.7 1.0
O A:HOH421 2.6 18.2 1.0
O A:HOH407 3.0 34.1 1.0
PG A:ATP401 3.4 23.6 1.0
PB A:ATP401 3.5 19.6 1.0
O3G A:ATP401 3.6 19.0 1.0
O3B A:ATP401 3.7 23.5 1.0
O A:HOH490 3.9 36.9 1.0
O3A A:ATP401 4.1 15.5 1.0
OE1 A:GLN137 4.2 15.5 1.0
O A:HOH475 4.2 27.5 1.0
O A:HOH458 4.2 28.7 1.0
O1A A:ATP401 4.3 18.6 1.0
CA A:GLY13 4.4 18.4 1.0
NZ A:LYS18 4.5 14.7 1.0
O A:HOH511 4.5 31.5 1.0
CD A:GLN137 4.6 19.2 1.0
OD1 A:ASP154 4.6 32.5 1.0
PA A:ATP401 4.7 17.3 1.0
OD1 A:ASP11 4.7 17.4 1.0
O2B A:ATP401 4.7 18.7 1.0
OD2 A:ASP154 4.7 24.8 1.0
O1G A:ATP401 4.7 23.3 1.0
OD2 A:ASP11 4.8 18.3 1.0

Calcium binding site 2 out of 2 in 1nlv

Go back to Calcium Binding Sites List in 1nlv
Calcium binding site 2 out of 2 in the Crystal Structure of Dictyostelium Discoideum Actin Complexed with Ca Atp and Human Gelsolin Segment 1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Dictyostelium Discoideum Actin Complexed with Ca Atp and Human Gelsolin Segment 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca402

b:20.5
occ:1.00
O G:VAL121 2.4 22.3 1.0
O G:GLY41 2.4 22.1 1.0
OD2 G:ASP42 2.4 25.3 1.0
O G:HOH405 2.4 18.4 1.0
O G:HOH470 2.4 22.6 1.0
OE2 G:GLU73 2.4 17.4 1.0
OE1 G:GLU73 2.5 13.4 1.0
CD G:GLU73 2.8 15.0 1.0
C G:GLY41 3.4 23.6 1.0
C G:VAL121 3.6 26.8 1.0
CG G:ASP42 3.6 28.4 1.0
N G:VAL121 3.9 23.3 1.0
CA G:ASP42 4.0 17.6 1.0
N G:ASP42 4.1 18.9 1.0
O G:HOH410 4.2 18.7 1.0
CG1 G:VAL121 4.3 22.7 1.0
CG G:GLU73 4.3 12.0 1.0
CA G:VAL121 4.3 24.6 1.0
C G:GLY120 4.4 24.9 1.0
CB G:ASP42 4.4 18.1 1.0
OD1 G:ASP42 4.5 28.9 1.0
CA G:GLY41 4.5 21.8 1.0
O G:HOH481 4.6 43.4 1.0
N G:ALA122 4.6 26.4 1.0
C G:ALA122 4.6 19.8 1.0
O G:HOH475 4.6 54.3 1.0
OG G:SER70 4.6 18.4 1.0
CA G:GLY120 4.6 24.8 1.0
N G:SER70 4.7 15.8 1.0
CA G:ALA122 4.7 23.9 1.0
CA G:CYS69 4.7 17.2 1.0
O G:HOH409 4.8 23.4 1.0
N G:SER123 4.8 17.3 1.0
O G:ALA122 4.9 17.6 1.0
CB G:VAL121 5.0 23.4 1.0

Reference:

S.M.Vorobiev, B.Strokopytov, D.G.Drubin, C.Frieden, S.Ono, J.Condeelis, P.A.Rubenstein, S.C.Almo. The Structure of Non-Vertebrate Actin: Implications For the Atp Hydrolytic Mechanism Proc.Natl.Acad.Sci.Usa V. 100 5760 2003.
ISSN: ISSN 0027-8424
PubMed: 12732734
DOI: 10.1073/PNAS.0832273100
Page generated: Sat Dec 12 03:08:58 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy