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Calcium in PDB 1nmc: Complex Between NC10 Anti-Influenza Virus Neuraminidase Single Chain Antibody with A 15 Residue Linker and Influenza Virus Neuraminidase

Enzymatic activity of Complex Between NC10 Anti-Influenza Virus Neuraminidase Single Chain Antibody with A 15 Residue Linker and Influenza Virus Neuraminidase

All present enzymatic activity of Complex Between NC10 Anti-Influenza Virus Neuraminidase Single Chain Antibody with A 15 Residue Linker and Influenza Virus Neuraminidase:
3.2.1.18;

Protein crystallography data

The structure of Complex Between NC10 Anti-Influenza Virus Neuraminidase Single Chain Antibody with A 15 Residue Linker and Influenza Virus Neuraminidase, PDB code: 1nmc was solved by R.L.Malby, A.J.Mccoy, A.A.Kortt, P.J.Hudson, P.M.Colman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.00 / 2.50
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 144.400, 144.400, 227.000, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 26

Calcium Binding Sites:

The binding sites of Calcium atom in the Complex Between NC10 Anti-Influenza Virus Neuraminidase Single Chain Antibody with A 15 Residue Linker and Influenza Virus Neuraminidase (pdb code 1nmc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Complex Between NC10 Anti-Influenza Virus Neuraminidase Single Chain Antibody with A 15 Residue Linker and Influenza Virus Neuraminidase, PDB code: 1nmc:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1nmc

Go back to Calcium Binding Sites List in 1nmc
Calcium binding site 1 out of 2 in the Complex Between NC10 Anti-Influenza Virus Neuraminidase Single Chain Antibody with A 15 Residue Linker and Influenza Virus Neuraminidase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Complex Between NC10 Anti-Influenza Virus Neuraminidase Single Chain Antibody with A 15 Residue Linker and Influenza Virus Neuraminidase within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Ca478

b:65.4
occ:1.00
 O N:HOH543 2.4 41.5 1.0
O N:ASN347 2.6 37.6 1.0
O N:GLY297 3.0 49.9 1.0
O N:ASN294 3.2 52.5 1.0
OD2 N:ASP324 3.7 30.6 1.0
CG N:ASP324 3.8 22.2 1.0
C N:ASN347 3.8 36.6 1.0
C N:GLY297 3.9 53.4 1.0
CA N:ASN294 3.9 51.0 1.0
OD1 N:ASP324 3.9 17.3 1.0
C N:ASN294 3.9 52.9 1.0
N N:ASN294 3.9 45.2 1.0
O N:GLN296 4.2 64.1 1.0
CA N:GLY348 4.3 17.8 1.0
CB N:ASP324 4.4 14.2 1.0
C N:GLN296 4.4 63.3 1.0
N N:SER298 4.5 52.7 1.0
CA N:SER298 4.5 51.3 1.0
N N:GLY348 4.6 26.2 1.0
O N:PRO326 4.6 12.0 1.0
OG N:SER298 4.6 50.1 1.0
N N:ASN347 4.6 53.9 1.0
N N:GLY297 4.7 62.1 1.0
C N:ASP293 4.8 41.8 1.0
CA N:GLY297 4.8 56.0 1.0
O N:ASN344 4.9 73.3 1.0
CA N:ASN347 4.9 45.7 1.0
N N:GLN296 5.0 61.0 1.0

Calcium binding site 2 out of 2 in 1nmc

Go back to Calcium Binding Sites List in 1nmc
Calcium binding site 2 out of 2 in the Complex Between NC10 Anti-Influenza Virus Neuraminidase Single Chain Antibody with A 15 Residue Linker and Influenza Virus Neuraminidase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Complex Between NC10 Anti-Influenza Virus Neuraminidase Single Chain Antibody with A 15 Residue Linker and Influenza Virus Neuraminidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca478

b:65.4
occ:1.00
 O A:HOH543 2.4 41.5 1.0
O A:ASN347 2.6 37.6 1.0
O A:GLY297 3.0 49.9 1.0
O A:ASN294 3.2 52.5 1.0
OD2 A:ASP324 3.7 30.6 1.0
CG A:ASP324 3.8 22.2 1.0
C A:ASN347 3.8 36.6 1.0
CA A:ASN294 3.9 51.0 1.0
C A:GLY297 3.9 53.4 1.0
OD1 A:ASP324 3.9 17.3 1.0
C A:ASN294 3.9 52.9 1.0
N A:ASN294 3.9 45.2 1.0
O A:GLN296 4.2 64.1 1.0
CA A:GLY348 4.3 17.8 1.0
CB A:ASP324 4.4 14.2 1.0
C A:GLN296 4.4 63.3 1.0
N A:SER298 4.5 52.7 1.0
CA A:SER298 4.5 51.3 1.0
N A:GLY348 4.6 26.2 1.0
O A:PRO326 4.6 12.0 1.0
OG A:SER298 4.6 50.1 1.0
N A:ASN347 4.6 53.9 1.0
N A:GLY297 4.7 62.1 1.0
C A:ASP293 4.8 41.8 1.0
CA A:GLY297 4.8 56.0 1.0
O A:ASN344 4.9 73.3 1.0
CA A:ASN347 4.9 45.7 1.0
N A:GLN296 5.0 61.0 1.0

Reference:

R.L.Malby, A.J.Mccoy, A.A.Kortt, P.J.Hudson, P.M.Colman. Three-Dimensional Structures of Single-Chain Fv-Neuraminidase Complexes. J.Mol.Biol. V. 279 901 1998.
ISSN: ISSN 0022-2836
PubMed: 9642070
DOI: 10.1006/JMBI.1998.1794
Page generated: Sat Dec 12 03:09:08 2020

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