Calcium in PDB 1nmd: Crystal Structure of D. Discoideum Actin-Gelsolin Segment 1 Complex Crystallized in Presence of Lithium Atp

The structure of Crystal Structure of D. Discoideum Actin-Gelsolin Segment 1 Complex Crystallized in Presence of Lithium Atp, PDB code: 1nmd was solved by S.M.Vorobiev, S.Welti, J.Condeelis, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	178.912, 69.053, 56.613, 90.00, 104.65, 90.00
R / Rfree (%)	20.3 / 25

The binding sites of Calcium atom in the Crystal Structure of D. Discoideum Actin-Gelsolin Segment 1 Complex Crystallized in Presence of Lithium Atp (pdb code 1nmd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of D. Discoideum Actin-Gelsolin Segment 1 Complex Crystallized in Presence of Lithium Atp, PDB code: 1nmd:

Calcium binding site 1 out of 1 in the Crystal Structure of D. Discoideum Actin-Gelsolin Segment 1 Complex Crystallized in Presence of Lithium Atp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of D. Discoideum Actin-Gelsolin Segment 1 Complex Crystallized in Presence of Lithium Atp within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca402 b:24.4 occ:1.00 O G:GLY41 2.3 24.9 1.0 OD2 G:ASP42 2.4 20.6 1.0 O G:VAL121 2.4 25.3 1.0 OE2 G:GLU73 2.4 20.8 1.0 O G:HOH422 2.5 21.7 1.0 O G:HOH414 2.6 20.2 1.0 OE1 G:GLU73 2.6 21.1 1.0 CD G:GLU73 2.8 20.7 1.0 C G:GLY41 3.4 22.4 1.0 C G:VAL121 3.6 28.0 1.0 CG G:ASP42 3.6 25.0 1.0 CA G:ASP42 3.9 16.4 1.0 N G:VAL121 4.0 28.4 1.0 N G:ASP42 4.1 19.0 1.0 CG1 G:VAL121 4.3 20.8 1.0 O G:HOH406 4.3 17.3 1.0 CG G:GLU73 4.3 13.9 1.0 C G:GLY120 4.4 26.8 1.0 CA G:VAL121 4.4 27.2 1.0 CB G:ASP42 4.4 17.7 1.0 CA G:GLY41 4.4 20.4 1.0 OD1 G:ASP42 4.6 27.0 1.0 OG G:SER70 4.6 20.7 1.0 C G:ALA122 4.6 21.2 1.0 CA G:GLY120 4.6 26.9 1.0 N G:ALA122 4.6 26.4 1.0 CA G:CYS69 4.7 17.5 1.0 CA G:ALA122 4.8 23.9 1.0 N G:SER70 4.8 19.8 1.0 N G:SER123 4.8 20.9 1.0 O G:ALA122 4.8 19.1 1.0 O G:HOH438 4.8 49.0 1.0 O G:HOH403 4.9 18.7 1.0 O G:HOH454 4.9 31.2 1.0 O G:GLY120 5.0 29.1 1.0

S.M.Vorobiev, B.Strokopytov, D.G.Drubin, C.Frieden, S.Ono, J.Condeelis, P.A.Rubenstein, S.C.Almo. The Structure of the Non-Vertebrate Actin: Implications For the Atp Hydrolytic Mechanism Proc.Natl.Acad.Sci.Usa V. 100 5760 2003.
ISSN: ISSN 0027-8424
PubMed: 12732734
DOI: 10.1073/PNAS.0832273100