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Calcium in PDB 1nrw: The Structure of A Haloacid Dehalogenase-Like Hydrolase From B. Subtilis

Protein crystallography data

The structure of The Structure of A Haloacid Dehalogenase-Like Hydrolase From B. Subtilis, PDB code: 1nrw was solved by M.E.Cuff, Y.Kim, R.Zhang, A.Joachimiak, F.Collart, P.Quartey, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.45 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.116, 68.423, 95.032, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 22.2

Calcium Binding Sites:

The binding sites of Calcium atom in the The Structure of A Haloacid Dehalogenase-Like Hydrolase From B. Subtilis (pdb code 1nrw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Structure of A Haloacid Dehalogenase-Like Hydrolase From B. Subtilis, PDB code: 1nrw:

Calcium binding site 1 out of 1 in 1nrw

Go back to Calcium Binding Sites List in 1nrw
Calcium binding site 1 out of 1 in the The Structure of A Haloacid Dehalogenase-Like Hydrolase From B. Subtilis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of A Haloacid Dehalogenase-Like Hydrolase From B. Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca903

b:23.4
occ:1.00
OD2 A:ASP7 2.4 12.9 1.0
O A:HOH915 2.5 14.7 1.0
OD1 A:ASP237 2.5 14.8 1.0
O A:ASP9 2.5 13.7 1.0
OG A:SER238 2.5 15.9 1.0
O1 A:PO4900 2.5 13.1 1.0
CG A:ASP7 3.4 13.5 1.0
CG A:ASP237 3.4 16.3 1.0
C A:ASP9 3.5 11.0 1.0
CB A:SER238 3.5 14.8 1.0
OD2 A:ASP237 3.7 14.4 1.0
OD1 A:ASP7 3.7 13.2 1.0
P A:PO4900 3.9 14.2 1.0
OD2 A:ASP241 4.0 13.4 1.0
N A:SER238 4.0 15.4 1.0
CB A:ASP9 4.1 13.8 1.0
CA A:ASP9 4.2 11.8 1.0
O3 A:PO4900 4.3 15.6 1.0
N A:GLY10 4.3 10.6 1.0
OG1 A:THR11 4.4 12.5 1.0
CA A:SER238 4.4 15.1 1.0
CA A:GLY10 4.5 10.5 1.0
N A:ASP9 4.5 11.2 1.0
OD1 A:ASN240 4.6 15.1 1.0
O A:HOH946 4.6 25.6 1.0
CB A:ASP7 4.6 11.1 1.0
N A:ASP237 4.7 14.3 1.0
O4 A:PO4900 4.7 11.6 1.0
CB A:ASP237 4.8 14.8 1.0
O2 A:PO4900 4.8 14.3 1.0
O A:HOH914 4.8 15.9 1.0
C A:GLY10 4.8 12.1 1.0
O A:HOH980 4.9 27.7 1.0
CG A:ASP241 4.9 13.9 1.0
C A:ASP237 4.9 14.4 1.0
OD1 A:ASP241 5.0 13.6 1.0

Reference:

M.E.Cuff, Y.Kim, R.Zhang, A.Joachimiak, F.Collart, P.Quartey. The Structure of A Haloacid Dehalogenase-Like Hydrolase From B. Subtilis To Be Published.
Page generated: Thu Jul 11 13:00:07 2024

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