Calcium in PDB 1nt8: Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 2.00 A

The structure of Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 2.00 A, PDB code: 1nt8 was solved by C.J.Cardin, B.C.Gale, J.H.Thorpe, S.C.M.Texieira, Y.Gan, M.I.A.A.Moraes, A.L.Brogden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.92 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	65.949, 23.756, 37.204, 90.00, 109.98, 90.00
R / Rfree (%)	24.7 / 28.3

The binding sites of Calcium atom in the Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 2.00 A (pdb code 1nt8). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 2.00 A, PDB code: 1nt8:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 2.00 A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 2.00 A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca102 b:55.1 occ:1.00 O A:HOH116 2.4 43.8 1.0 O A:HOH115 2.5 51.0 1.0 O A:HOH114 2.6 38.1 1.0 O B:HOH103 2.9 45.7 1.0 O A:HOH103 3.0 31.0 1.0 O4' A:DG3 4.1 50.0 1.0 C5' A:DG4 4.2 54.5 1.0 C4' A:DG3 4.4 52.3 1.0 N3 A:DG3 4.6 37.7 1.0 O4' A:DG4 4.6 51.7 1.0 C4' A:DG4 4.7 52.4 1.0 N2 B:DG19 4.7 25.5 1.0 O A:HOH118 4.8 39.0 1.0

Calcium binding site 2 out of 2 in the Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 2.00 A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 2.00 A within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca101 b:44.7 occ:1.00 O B:HOH102 2.4 19.7 1.0 O B:HOH118 2.4 31.6 1.0 O B:HOH119 2.6 25.0 1.0 O B:HOH110 2.6 42.0 1.0 O B:HOH104 2.7 25.9 1.0 O B:HOH105 3.2 46.6 1.0 O2 B:DC12 4.2 35.3 1.0 O4' B:DG13 4.7 33.0 1.0 O B:HOH111 4.7 31.0 1.0 O4' B:DC12 4.9 36.0 1.0 C4' B:DG13 5.0 40.5 1.0

C.J.Cardin, B.C.Gale, J.H.Thorpe, S.C.M.Texieira, Y.Gan, M.I.A.A.Moraes, A.L.Brogden. Structural Analysis of Two Holliday Junctions Formed By the Sequences Tcggtaccga and Ccggtaccgg To Be Published.