Calcium in PDB 1nvn: Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 1.8 A

The structure of Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 1.8 A, PDB code: 1nvn was solved by C.J.Cardin, B.C.Gale, J.H.Thorpe, S.C.M.Teixeira, Y.Gan, M.I.A.A.Moraes, A.L.Brogden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.92 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	66.380, 23.790, 37.120, 90.00, 110.13, 90.00
R / Rfree (%)	20.6 / 26.4

The binding sites of Calcium atom in the Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 1.8 A (pdb code 1nvn). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 1.8 A, PDB code: 1nvn:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 1.8 A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 1.8 A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca101 b:29.2 occ:1.00 O A:HOH143 2.1 29.4 1.0 O A:HOH115 2.2 19.7 1.0 O A:HOH159 2.2 18.6 1.0 O A:HOH116 2.6 20.6 1.0 O B:HOH142 2.8 21.9 1.0 O4' A:DG3 3.8 20.4 1.0 C4' A:DG3 4.1 22.2 1.0 O A:HOH147 4.4 33.2 1.0 N2 B:DG9 4.5 10.8 1.0 N3 A:DG3 4.5 11.4 1.0 O A:HOH162 4.5 18.9 1.0 O4' A:DG4 4.6 23.2 1.0 O A:HOH160 4.6 22.3 1.0 C5' A:DG4 4.7 25.0 1.0 O B:HOH118 4.8 22.0 1.0 C1' A:DG3 4.8 19.0 1.0 O2 A:DC2 4.8 8.9 1.0 O A:HOH114 4.9 19.1 1.0 C5' A:DG3 4.9 22.4 1.0 C4' A:DG4 4.9 24.7 1.0

Calcium binding site 2 out of 2 in the Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 1.8 A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structural Characterisation of the Holliday Junction Formed By the Sequence Ccggtaccgg at 1.8 A within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca102 b:25.3 occ:1.00 O B:HOH131 2.1 21.7 1.0 O B:HOH107 2.2 20.7 1.0 O B:HOH141 2.4 23.1 1.0 O B:HOH132 2.4 26.4 1.0 O B:HOH106 2.5 12.0 1.0 O B:HOH185 2.5 32.4 1.0 O B:HOH103 2.6 17.9 1.0 O B:HOH105 3.9 20.1 1.0 O B:HOH104 4.1 28.1 1.0 O B:HOH173 4.1 26.7 1.0 O2 B:DC2 4.4 11.1 1.0 O B:HOH108 4.4 15.8 1.0 O B:HOH168 4.5 27.9 1.0 O4' B:DC2 4.7 16.1 1.0 O4' B:DG3 4.7 18.8 1.0 O B:HOH178 4.8 28.2 1.0 O B:HOH109 4.9 16.9 1.0

C.J.Cardin, B.C.Gale, J.H.Thorpe, S.C.M.Teixeira, Y.Gan, M.I.A.A.Moraes, A.L.Brogden. Structural Analysis of Two Holliday Junctions Formed By the Sequences Tcggtaccga and Ccggtaccgg To Be Published.