Calcium in PDB 1nwd: Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase

All present enzymatic activity of Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase:
4.1.1.15;

The binding sites of Calcium atom in the Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase (pdb code 1nwd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase, PDB code: 1nwd:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca149 b:0.0 occ:1.00 OD1 A:ASP24 3.1 0.0 1.0 OG1 A:THR26 3.1 0.0 1.0 OE2 A:GLU31 3.2 0.0 1.0 HG23 A:THR28 3.2 0.0 1.0 OD2 A:ASP24 3.2 0.0 1.0 OD2 A:ASP22 3.2 0.0 1.0 HG1 A:THR26 3.4 0.0 1.0 O A:THR26 3.4 0.0 1.0 CG A:ASP24 3.5 0.0 1.0 CD A:GLU31 3.6 0.0 1.0 OE1 A:GLU31 3.6 0.0 1.0 HB2 A:ASP22 3.6 0.0 1.0 CG A:ASP22 3.9 0.0 1.0 HG21 A:THR28 3.9 0.0 1.0 CG2 A:THR28 4.1 0.0 1.0 H A:THR26 4.1 0.0 1.0 HB3 A:ASP22 4.1 0.0 1.0 CB A:ASP22 4.1 0.0 1.0 HB2 A:GLU31 4.2 0.0 1.0 H A:THR28 4.3 0.0 1.0 C A:THR26 4.3 0.0 1.0 CB A:THR26 4.4 0.0 1.0 OD1 A:ASP20 4.6 0.0 1.0 HB A:THR26 4.6 0.0 1.0 HG22 A:THR28 4.7 0.0 1.0 CA A:THR26 4.7 0.0 1.0 CG A:GLU31 4.7 0.0 1.0 N A:THR26 4.8 0.0 1.0 OD1 A:ASP22 4.9 0.0 1.0 HB A:THR28 4.9 0.0 1.0 HG2 A:GLU31 5.0 0.0 1.0 CB A:GLU31 5.0 0.0 1.0

Calcium binding site 2 out of 4 in the Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca150 b:0.0 occ:1.00 HG2 A:GLU67 2.9 0.0 1.0 H A:ASP64 2.9 0.0 1.0 HD22 A:ASN60 2.9 0.0 1.0 HB2 A:GLU67 2.9 0.0 1.0 O A:THR62 3.0 0.0 1.0 OD1 A:ASP64 3.0 0.0 1.0 HB3 A:GLU67 3.3 0.0 1.0 HA A:ILE63 3.4 0.0 1.0 OD2 A:ASP58 3.4 0.0 1.0 CB A:GLU67 3.5 0.0 1.0 CG A:GLU67 3.6 0.0 1.0 HB2 A:ASP64 3.6 0.0 1.0 ND2 A:ASN60 3.7 0.0 1.0 OD1 A:ASN60 3.7 0.0 1.0 N A:ASP64 3.9 0.0 1.0 CG A:ASP64 4.1 0.0 1.0 HG1 A:THR62 4.1 0.0 1.0 OE1 A:GLU67 4.1 0.0 1.0 CG A:ASN60 4.2 0.0 1.0 C A:THR62 4.2 0.0 1.0 CB A:ASP64 4.3 0.0 1.0 HD13 A:ILE63 4.3 0.0 1.0 CA A:ILE63 4.3 0.0 1.0 CG A:ASP58 4.3 0.0 1.0 HB2 A:ASP58 4.3 0.0 1.0 CD A:GLU67 4.4 0.0 1.0 HG3 A:GLU67 4.5 0.0 1.0 HD21 A:ASN60 4.5 0.0 1.0 C A:ILE63 4.6 0.0 1.0 N A:ILE63 4.7 0.0 1.0 CA A:ASP64 4.7 0.0 1.0 OD1 A:ASP56 4.8 0.0 1.0 H A:GLU67 4.8 0.0 1.0 CB A:ASP58 4.9 0.0 1.0 HD11 A:ILE63 4.9 0.0 1.0 CA A:GLU67 5.0 0.0 1.0

Calcium binding site 3 out of 4 in the Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca151 b:0.0 occ:1.00 HB3 A:TYR99 2.7 0.0 1.0 OE1 A:GLN135 2.9 0.0 1.0 OD2 A:ASP93 2.9 0.0 1.0 H A:SER101 3.0 0.0 1.0 OD1 A:ASN97 3.0 0.0 1.0 HB2 A:TYR99 3.0 0.0 1.0 OE1 A:GLU104 3.1 0.0 1.0 HB2 A:SER101 3.3 0.0 1.0 HA A:ILE100 3.3 0.0 1.0 CB A:TYR99 3.3 0.0 1.0 C A:TYR99 3.4 0.0 1.0 N A:SER101 3.5 0.0 1.0 N A:ILE100 3.5 0.0 1.0 O A:TYR99 3.6 0.0 1.0 HD22 A:ASN97 3.7 0.0 1.0 CA A:ILE100 3.8 0.0 1.0 CD A:GLN135 3.8 0.0 1.0 OD1 A:ASP95 3.9 0.0 1.0 C A:ILE100 3.9 0.0 1.0 H A:ILE100 3.9 0.0 1.0 CA A:TYR99 3.9 0.0 1.0 CG A:ASN97 4.0 0.0 1.0 CG A:ASP93 4.1 0.0 1.0 CD A:GLU104 4.1 0.0 1.0 CB A:SER101 4.2 0.0 1.0 ND2 A:ASN97 4.2 0.0 1.0 HB3 A:GLN135 4.2 0.0 1.0 H A:ASN97 4.2 0.0 1.0 HG2 A:GLN135 4.3 0.0 1.0 CA A:SER101 4.4 0.0 1.0 OE2 A:GLU104 4.4 0.0 1.0 HB3 A:SER101 4.4 0.0 1.0 CG A:GLN135 4.6 0.0 1.0 CG A:TYR99 4.6 0.0 1.0 H A:TYR99 4.6 0.0 1.0 HA A:SER101 4.7 0.0 1.0 OD1 A:ASP93 4.7 0.0 1.0 HE22 A:GLN135 4.7 0.0 1.0 NE2 A:GLN135 4.7 0.0 1.0 N A:TYR99 4.7 0.0 1.0 HA A:TYR99 4.8 0.0 1.0 CG A:ASP95 4.9 0.0 1.0 O A:ILE100 4.9 0.0 1.0 HB3 A:ASP93 4.9 0.0 1.0 H A:GLY96 5.0 0.0 1.0 CB A:GLN135 5.0 0.0 1.0

Calcium binding site 4 out of 4 in the Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Solution Structure of CA2+/Calmodulin Bound to the C- Terminal Domain of Petunia Glutamate Decarboxylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca152 b:0.0 occ:1.00 H A:ASP133 2.4 0.0 1.0 H A:GLN135 2.5 0.0 1.0 HB2 A:ASP131 2.6 0.0 1.0 H A:GLY132 2.8 0.0 1.0 O A:GLN135 2.8 0.0 1.0 OD1 A:ASP129 2.9 0.0 1.0 OD1 A:ASP133 2.9 0.0 1.0 OE1 A:GLU140 3.2 0.0 1.0 N A:ASP133 3.2 0.0 1.0 OD2 A:ASP129 3.3 0.0 1.0 N A:GLY132 3.4 0.0 1.0 N A:GLN135 3.4 0.0 1.0 CG A:ASP129 3.5 0.0 1.0 CG A:ASP133 3.5 0.0 1.0 C A:GLN135 3.6 0.0 1.0 HE1 A:TYR99 3.6 0.0 1.0 HB2 A:GLN135 3.6 0.0 1.0 H A:GLY134 3.6 0.0 1.0 CB A:ASP131 3.6 0.0 1.0 N A:GLY134 3.9 0.0 1.0 CA A:GLN135 3.9 0.0 1.0 HA2 A:GLY132 3.9 0.0 1.0 HB3 A:ASP131 4.0 0.0 1.0 CA A:ASP133 4.0 0.0 1.0 OD2 A:ASP133 4.0 0.0 1.0 CD A:GLU140 4.0 0.0 1.0 C A:ASP133 4.0 0.0 1.0 CA A:GLY132 4.0 0.0 1.0 OE2 A:GLU140 4.1 0.0 1.0 C A:GLY132 4.1 0.0 1.0 C A:ASP131 4.2 0.0 1.0 H A:ASP131 4.2 0.0 1.0 CB A:ASP133 4.3 0.0 1.0 CA A:ASP131 4.3 0.0 1.0 CB A:GLN135 4.3 0.0 1.0 HA A:VAL136 4.5 0.0 1.0 CE1 A:TYR99 4.5 0.0 1.0 C A:GLY134 4.5 0.0 1.0 N A:ASP131 4.5 0.0 1.0 CG A:ASP131 4.6 0.0 1.0 N A:VAL136 4.6 0.0 1.0 CA A:GLY134 4.6 0.0 1.0 OD1 A:ASP131 4.6 0.0 1.0 O A:ASP133 4.7 0.0 1.0 HB3 A:ASP133 4.8 0.0 1.0 HA2 A:GLY134 4.8 0.0 1.0 H A:ASN137 4.9 0.0 1.0 HA A:GLN135 5.0 0.0 1.0 HD1 A:TYR99 5.0 0.0 1.0 CB A:ASP129 5.0 0.0 1.0 HA A:ASP133 5.0 0.0 1.0

K.L.Yap, T.Yuan, T.K.Mal, H.J.Vogel, M.Ikura. Structural Basis For Simultaneous Binding of Two Carboxy-Terminal Peptides of Plant Glutamate Decarboxylase to Calmodulin J.Mol.Biol. V. 328 193 2003.
ISSN: ISSN 0022-2836
PubMed: 12684008
DOI: 10.1016/S0022-2836(03)00271-7