Calcium in PDB 1nxc: Structure of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals the Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases)

Enzymatic activity of Structure of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals the Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases)

All present enzymatic activity of Structure of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals the Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases):
3.2.1.113;

Protein crystallography data

The structure of Structure of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals the Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases), PDB code: 1nxc was solved by W.Tempel, Z.-J.Liu, K.Karaveg, J.Rose, K.W.Moremen, B.-C.Wang, Southeastcollaboratory For Structural Genomics (Secsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.50 / 1.51
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.288, 72.164, 129.571, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 19

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals the Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) (pdb code 1nxc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals the Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases), PDB code: 1nxc:

Calcium binding site 1 out of 1 in 1nxc

Go back to Calcium Binding Sites List in 1nxc
Calcium binding site 1 out of 1 in the Structure of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals the Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals the Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca656

b:4.1
occ:1.00
 O A:HOH1091 2.4 4.7 1.0
O A:THR635 2.4 3.1 1.0
O A:HOH1089 2.4 4.8 1.0
O A:HOH1086 2.4 5.0 1.0
OG1 A:THR635 2.5 2.9 1.0
O A:HOH1090 2.5 4.9 1.0
O A:HOH1087 2.6 3.0 1.0
O A:HOH1088 2.9 11.0 1.0
C A:THR635 3.4 3.5 1.0
CB A:THR635 3.6 3.1 1.0
CA A:THR635 3.8 2.7 1.0
CG2 A:THR635 4.0 3.8 1.0
OE1 A:GLU419 4.1 4.2 1.0
O A:HOH1010 4.2 6.4 1.0
OE1 A:GLU611 4.2 4.6 1.0
O A:HOH1036 4.3 7.2 1.0
O A:HOH1006 4.5 3.5 1.0
OE1 A:GLU552 4.5 5.7 1.0
OE2 A:GLU549 4.5 5.8 1.0
OE2 A:GLU419 4.6 4.8 1.0
OE2 A:GLU611 4.7 5.6 1.0
N A:GLU636 4.7 3.3 1.0
CD A:GLU419 4.8 3.9 1.0
CD A:GLU611 4.8 4.7 1.0
OE2 A:GLU552 5.0 7.9 1.0

Reference:

W.Tempel, K.Karaveg, Z.-J.Liu, J.Rose, B.-C.Wang, K.W.Moremen. Structure of Mouse Golgi Alpha-Mannosidase Ia Reveals the Molecular Basis For Substrate Specificity Among Class 1 (Family 47 Glycosylhydrolase) ALPHA1,2-Mannosidases J.Biol.Chem. V. 279 29774 2004.
ISSN: ISSN 0021-9258
PubMed: 15102839
DOI: 10.1074/JBC.M403065200
Page generated: Sat Dec 12 03:09:50 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy