Calcium in PDB 1nya: uc(Nmr) Solution Structure of Calerythrin, An Ef-Hand Calcium- Binding Protein

The binding sites of Calcium atom in the uc(Nmr) Solution Structure of Calerythrin, An Ef-Hand Calcium- Binding Protein (pdb code 1nya). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the uc(Nmr) Solution Structure of Calerythrin, An Ef-Hand Calcium- Binding Protein, PDB code: 1nya:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the uc(Nmr) Solution Structure of Calerythrin, An Ef-Hand Calcium- Binding Protein


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of uc(Nmr) Solution Structure of Calerythrin, An Ef-Hand Calcium- Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca500 b:0.0 occ:1.00 OD1 A:ASN21 2.3 0.0 1.0 HA A:ASP17 2.6 0.0 1.0 OD2 A:ASP28 2.7 0.0 1.0 O A:ALA23 2.8 0.0 1.0 OD1 A:ASP19 2.8 0.0 1.0 OD1 A:ASP17 2.8 0.0 1.0 OD1 A:ASP28 2.8 0.0 1.0 CG A:ASP28 3.0 0.0 1.0 H A:PHE18 3.2 0.0 1.0 H A:ASP19 3.2 0.0 1.0 H A:ASN21 3.3 0.0 1.0 CG A:ASN21 3.4 0.0 1.0 HD22 A:ASN21 3.5 0.0 1.0 H A:GLY20 3.6 0.0 1.0 CA A:ASP17 3.6 0.0 1.0 N A:PHE18 3.7 0.0 1.0 HA A:LEU24 3.8 0.0 1.0 H A:ALA23 3.8 0.0 1.0 ND2 A:ASN21 3.9 0.0 1.0 C A:ASP17 3.9 0.0 1.0 CG A:ASP17 3.9 0.0 1.0 H A:GLU25 4.0 0.0 1.0 C A:ALA23 4.0 0.0 1.0 CG A:ASP19 4.0 0.0 1.0 HG3 A:GLU25 4.1 0.0 1.0 HB2 A:PHE18 4.2 0.0 1.0 N A:ASP19 4.2 0.0 1.0 HD12 A:LEU24 4.2 0.0 1.0 N A:ASN21 4.3 0.0 1.0 HD21 A:LEU24 4.3 0.0 1.0 N A:GLY20 4.3 0.0 1.0 CB A:ASP17 4.4 0.0 1.0 H A:GLY22 4.4 0.0 1.0 CB A:ASP28 4.4 0.0 1.0 H A:ASP17 4.5 0.0 1.0 N A:ASP17 4.5 0.0 1.0 HB2 A:ASP28 4.6 0.0 1.0 CB A:ASN21 4.6 0.0 1.0 N A:ALA23 4.7 0.0 1.0 CA A:PHE18 4.7 0.0 1.0 CA A:LEU24 4.7 0.0 1.0 OD2 A:ASP19 4.7 0.0 1.0 HB3 A:ASP28 4.8 0.0 1.0 N A:GLU25 4.8 0.0 1.0 N A:LEU24 4.8 0.0 1.0 HA2 A:GLY20 4.8 0.0 1.0 HB3 A:ASN21 4.9 0.0 1.0 HD21 A:ASN21 4.9 0.0 1.0 CB A:PHE18 4.9 0.0 1.0 O A:ASP17 4.9 0.0 1.0 HB3 A:ASP17 4.9 0.0 1.0 C A:PHE18 4.9 0.0 1.0 CA A:ALA23 5.0 0.0 1.0 CA A:ASP19 5.0 0.0 1.0 CA A:ASN21 5.0 0.0 1.0

Calcium binding site 2 out of 3 in the uc(Nmr) Solution Structure of Calerythrin, An Ef-Hand Calcium- Binding Protein


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of uc(Nmr) Solution Structure of Calerythrin, An Ef-Hand Calcium- Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:0.0 occ:1.00 OD1 A:ASP112 2.1 0.0 1.0 OD1 A:ASP116 2.1 0.0 1.0 HD22 A:ASN114 2.2 0.0 1.0 OE2 A:GLU123 2.3 0.0 1.0 OD2 A:ASP116 2.4 0.0 1.0 CG A:ASP116 2.5 0.0 1.0 CG A:ASP112 2.7 0.0 1.0 OD1 A:ASN114 2.7 0.0 1.0 O A:GLN118 2.7 0.0 1.0 OE1 A:GLU123 2.8 0.0 1.0 CD A:GLU123 2.8 0.0 1.0 OD2 A:ASP112 3.0 0.0 1.0 ND2 A:ASN114 3.0 0.0 1.0 CG A:ASN114 3.3 0.0 1.0 H A:GLN118 3.3 0.0 1.0 H A:ASP116 3.6 0.0 1.0 C A:GLN118 3.7 0.0 1.0 HB2 A:ASP112 3.9 0.0 1.0 CB A:ASP116 3.9 0.0 1.0 CB A:ASP112 3.9 0.0 1.0 HD21 A:ASN114 3.9 0.0 1.0 HB2 A:GLN118 3.9 0.0 1.0 H A:ASN120 4.0 0.0 1.0 N A:GLN118 4.1 0.0 1.0 HB3 A:ASP116 4.1 0.0 1.0 HA A:ASP112 4.2 0.0 1.0 H A:GLY117 4.2 0.0 1.0 CG A:GLU123 4.3 0.0 1.0 HB2 A:ASN120 4.3 0.0 1.0 N A:ASP116 4.3 0.0 1.0 HA A:ILE119 4.3 0.0 1.0 CA A:GLN118 4.4 0.0 1.0 H A:ASN114 4.5 0.0 1.0 CA A:ASP116 4.6 0.0 1.0 HB2 A:ASP116 4.6 0.0 1.0 HG2 A:GLU123 4.6 0.0 1.0 CA A:ASP112 4.6 0.0 1.0 HG3 A:GLU123 4.6 0.0 1.0 N A:GLY117 4.7 0.0 1.0 HB3 A:ASP112 4.7 0.0 1.0 CB A:GLN118 4.7 0.0 1.0 N A:ILE119 4.7 0.0 1.0 H A:ALA115 4.7 0.0 1.0 CB A:ASN114 4.8 0.0 1.0 N A:ASN120 4.8 0.0 1.0 C A:ASP116 4.9 0.0 1.0 CA A:ILE119 5.0 0.0 1.0

Calcium binding site 3 out of 3 in the uc(Nmr) Solution Structure of Calerythrin, An Ef-Hand Calcium- Binding Protein


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of uc(Nmr) Solution Structure of Calerythrin, An Ef-Hand Calcium- Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:0.0 occ:1.00 HA A:ASP146 2.1 0.0 1.0 OD1 A:ASN148 2.2 0.0 1.0 OD1 A:ASP146 2.3 0.0 1.0 OE2 A:GLU157 2.7 0.0 1.0 OE1 A:GLU157 2.7 0.0 1.0 OD1 A:ASN150 2.8 0.0 1.0 HB3 A:ASP146 2.8 0.0 1.0 O A:GLU152 2.8 0.0 1.0 CA A:ASP146 2.9 0.0 1.0 HD22 A:LEU153 2.9 0.0 1.0 CD A:GLU157 2.9 0.0 1.0 H A:ASN148 3.0 0.0 1.0 CB A:ASP146 3.0 0.0 1.0 CG A:ASP146 3.0 0.0 1.0 H A:ASN150 3.3 0.0 1.0 CG A:ASN148 3.3 0.0 1.0 C A:ASP146 3.4 0.0 1.0 H A:THR147 3.6 0.0 1.0 HA A:LEU153 3.6 0.0 1.0 H A:GLU152 3.7 0.0 1.0 HD22 A:ASN148 3.7 0.0 1.0 N A:THR147 3.7 0.0 1.0 CG A:ASN150 3.7 0.0 1.0 H A:GLY149 3.8 0.0 1.0 C A:GLU152 3.8 0.0 1.0 HD22 A:ASN150 3.9 0.0 1.0 N A:ASN148 3.9 0.0 1.0 CD2 A:LEU153 3.9 0.0 1.0 ND2 A:ASN148 4.0 0.0 1.0 H A:GLY151 4.0 0.0 1.0 O A:ASP146 4.1 0.0 1.0 HB2 A:ASP146 4.1 0.0 1.0 N A:ASP146 4.1 0.0 1.0 HG3 A:GLU152 4.2 0.0 1.0 N A:GLY149 4.2 0.0 1.0 HD23 A:LEU153 4.2 0.0 1.0 ND2 A:ASN150 4.2 0.0 1.0 N A:ASN150 4.2 0.0 1.0 OD2 A:ASP146 4.2 0.0 1.0 CG A:GLU157 4.3 0.0 1.0 N A:GLU152 4.3 0.0 1.0 HD21 A:LEU153 4.5 0.0 1.0 HG2 A:GLU157 4.5 0.0 1.0 CA A:ASN148 4.5 0.0 1.0 CB A:ASN148 4.5 0.0 1.0 CA A:LEU153 4.6 0.0 1.0 C A:ASN148 4.6 0.0 1.0 HG A:LEU153 4.6 0.0 1.0 N A:LEU153 4.6 0.0 1.0 O A:VAL145 4.6 0.0 1.0 HB2 A:GLU157 4.6 0.0 1.0 HA2 A:GLY149 4.6 0.0 1.0 HB3 A:GLU157 4.6 0.0 1.0 H A:SER154 4.7 0.0 1.0 N A:GLY151 4.7 0.0 1.0 CA A:GLU152 4.7 0.0 1.0 H A:ASP146 4.7 0.0 1.0 C A:VAL145 4.8 0.0 1.0 CA A:THR147 4.8 0.0 1.0 CB A:GLU157 4.8 0.0 1.0 C A:THR147 4.8 0.0 1.0 CG A:LEU153 4.8 0.0 1.0 CA A:GLY149 4.8 0.0 1.0 HB A:THR147 4.9 0.0 1.0 CB A:ASN150 4.9 0.0 1.0 HD21 A:ASN148 4.9 0.0 1.0

H.Tossavainen, P.Permi, A.Annila, I.Kilpelainen, T.Drakenberg. uc(Nmr) Solution Structure of Calerythrin, An Ef-Hand Calcium-Binding Protein From Saccharopolyspora Erythraea Eur.J.Biochem. V. 270 2505 2003.
ISSN: ISSN 0014-2956
PubMed: 12755706
DOI: 10.1046/J.1432-1033.2003.03623.X