Calcium in PDB 1o6v: Internalin (Inla, Listeria Monocytogenes) - Functional Domain, Uncomplexed

The structure of Internalin (Inla, Listeria Monocytogenes) - Functional Domain, Uncomplexed, PDB code: 1o6v was solved by W.-D.Schubert, C.Urbanke, T.Ziehm, V.Beier, M.P.Machner, E.Domann, J.Wehland, T.Chakraborty, D.W.Heinz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	158.11 / 1.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	85.589, 67.907, 154.251, 90.00, 103.48, 90.00
R / Rfree (%)	14.5 / 18.4

The binding sites of Calcium atom in the Internalin (Inla, Listeria Monocytogenes) - Functional Domain, Uncomplexed (pdb code 1o6v). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Internalin (Inla, Listeria Monocytogenes) - Functional Domain, Uncomplexed, PDB code: 1o6v:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Internalin (Inla, Listeria Monocytogenes) - Functional Domain, Uncomplexed


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Internalin (Inla, Listeria Monocytogenes) - Functional Domain, Uncomplexed within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1497 b:7.4 occ:0.25 OE2 A:GLU299 2.2 26.4 1.0 O A:HOH2500 2.3 24.4 0.7 O A:HOH2468 2.4 22.6 1.0 CD A:GLU299 3.3 19.9 1.0 O A:HOH2528 3.5 18.9 0.3 O A:HOH2502 3.6 8.0 0.7 O A:HOH2196 3.7 55.2 1.0 CG A:GLU299 3.9 14.3 1.0 OE1 A:GLU299 4.3 23.0 1.0 O A:HOH2529 4.4 22.4 0.7 OD2 A:ASP277 4.6 14.0 0.5 O A:HOH2470 4.7 37.2 1.0 O A:HOH2503 4.8 13.0 0.3 OG1 A:THR298 4.8 14.7 1.0 O A:HOH2527 4.9 20.7 1.0

Calcium binding site 2 out of 2 in the Internalin (Inla, Listeria Monocytogenes) - Functional Domain, Uncomplexed


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Internalin (Inla, Listeria Monocytogenes) - Functional Domain, Uncomplexed within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1497 b:7.8 occ:0.25 OE2 B:GLU299 2.3 24.4 1.0 O B:HOH2479 2.4 17.8 0.5 O B:HOH2449 2.5 21.5 1.0 CD B:GLU299 3.4 18.6 1.0 O B:HOH2513 3.5 24.5 0.5 O B:HOH2481 3.7 8.6 0.7 CG B:GLU299 4.0 13.6 1.0 O B:HOH2480 4.3 29.3 1.0 O B:HOH2448 4.3 35.7 1.0 OE1 B:GLU299 4.4 21.2 1.0 O B:HOH2511 4.4 16.5 0.5 OD2 B:ASP277 4.7 22.2 1.0 O B:HOH2482 4.8 14.3 0.3 OG1 B:THR298 4.8 14.6 1.0 O B:HOH2512 4.9 21.2 1.0

W.-D.Schubert, C.Urbanke, T.Ziehm, V.Beier, M.P.Machner, E.Domann, J.Wehland, T.Chakraborty, D.W.Heinz. Structure of Internalin, A Major Invasion Protein of Listeria Monocytogenes, in Complex with Its Human Receptor E-Cadherin Cell(Cambridge,Mass.) V. 111 825 2002.
ISSN: ISSN 0092-8674
PubMed: 12526809
DOI: 10.1016/S0092-8674(02)01136-4