Calcium in PDB 1opo: The Structure of Carnation Mottle Virus

The structure of The Structure of Carnation Mottle Virus, PDB code: 1opo was solved by E.Morgunova, Z.Dauter, E.Fry, D.Stuart, V.Stel'mashchuk, A.M.Mikhailov, K.S.Wilson, B.K.Vainshtein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	6.00 / 3.20
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	382.600, 382.600, 382.600, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / n/a

The binding sites of Calcium atom in the The Structure of Carnation Mottle Virus (pdb code 1opo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Structure of Carnation Mottle Virus, PDB code: 1opo:

Calcium binding site 1 out of 1 in the The Structure of Carnation Mottle Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of Carnation Mottle Virus within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca503 b:29.5 occ:1.00 OD1 C:ASN128 2.3 32.1 1.0 OD1 C:ASP200 2.4 38.4 1.0 OD2 B:ASP161 2.5 33.0 1.0 OD1 B:ASP161 2.6 35.0 1.0 OD2 C:ASP200 2.7 34.1 1.0 CG C:ASP200 2.9 35.3 1.0 CG B:ASP161 2.9 28.9 1.0 OD2 B:ASP158 3.0 12.1 1.0 OD1 B:ASP158 3.1 35.4 1.0 CG B:ASP158 3.3 22.5 1.0 CG C:ASN128 3.4 21.7 1.0 ND2 C:ASN128 4.2 18.8 1.0 CB C:ASP200 4.4 29.6 1.0 CB C:ASN128 4.4 17.6 1.0 CB B:ASP161 4.4 24.8 1.0 O C:ILE198 4.4 21.2 1.0 CE B:LYS207 4.5 17.9 1.0 CA C:ASN128 4.5 21.1 1.0 O C:ASN128 4.7 25.0 1.0 CB B:ASP158 4.7 25.9 1.0 NH2 C:ARG112 4.7 28.8 1.0 NZ B:LYS207 4.8 21.1 1.0 OG B:SER160 4.8 22.4 1.0 CD1 C:PHE197 4.9 27.7 1.0

E.Morgunova, Z.Dauter, E.Fry, D.Stuart, V.Stel'mashchuk, A.M.Mikhailov, K.S.Wilson, B.K.Vainshtein. The Atomic Structure of Carnation Mottle Virus Capsid Protein Febs Lett. V. 338 267 1994.
ISSN: ISSN 0014-5793
PubMed: 8307192
DOI: 10.1016/0014-5793(94)80281-5