Calcium in PDB 1osa: Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution
Protein crystallography data
The structure of Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution, PDB code: 1osa
was solved by
M.Sundaralingam,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
N/A /
1.68
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
29.890,
53.420,
25.350,
93.67,
96.88,
89.24
|
R / Rfree (%)
|
19.4 /
n/a
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution
(pdb code 1osa). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the
Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution, PDB code: 1osa:
Jump to Calcium binding site number:
1;
2;
3;
4;
Calcium binding site 1 out
of 4 in 1osa
Go back to
Calcium Binding Sites List in 1osa
Calcium binding site 1 out
of 4 in the Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca149
b:3.6
occ:1.00
|
O
|
A:THR26
|
2.1
|
2.0
|
1.0
|
OD1
|
A:ASP24
|
2.3
|
13.7
|
1.0
|
OD1
|
A:ASP20
|
2.3
|
2.0
|
1.0
|
OE1
|
A:GLU31
|
2.4
|
6.2
|
1.0
|
OD1
|
A:ASP22
|
2.5
|
13.8
|
1.0
|
OE2
|
A:GLU31
|
2.5
|
5.4
|
1.0
|
O
|
A:HOH153
|
2.6
|
10.2
|
1.0
|
CD
|
A:GLU31
|
2.8
|
11.2
|
1.0
|
CG
|
A:ASP24
|
3.3
|
11.9
|
1.0
|
C
|
A:THR26
|
3.4
|
2.0
|
1.0
|
CG
|
A:ASP20
|
3.4
|
6.8
|
1.0
|
CG
|
A:ASP22
|
3.6
|
15.0
|
1.0
|
OD2
|
A:ASP24
|
4.0
|
8.0
|
1.0
|
OG1
|
A:THR26
|
4.0
|
9.2
|
1.0
|
CA
|
A:ASP20
|
4.1
|
4.3
|
1.0
|
N
|
A:THR26
|
4.1
|
2.0
|
1.0
|
CB
|
A:ASP20
|
4.2
|
5.5
|
1.0
|
N
|
A:ASP24
|
4.2
|
6.2
|
1.0
|
OD2
|
A:ASP20
|
4.2
|
9.8
|
1.0
|
OD2
|
A:ASP22
|
4.3
|
16.9
|
1.0
|
CA
|
A:THR26
|
4.3
|
5.1
|
1.0
|
CB
|
A:ASP24
|
4.3
|
8.5
|
1.0
|
N
|
A:ASP22
|
4.3
|
12.5
|
1.0
|
CG
|
A:GLU31
|
4.3
|
10.7
|
1.0
|
C
|
A:ASP20
|
4.4
|
9.6
|
1.0
|
N
|
A:ILE27
|
4.4
|
4.6
|
1.0
|
N
|
A:GLY23
|
4.5
|
11.8
|
1.0
|
CA
|
A:ILE27
|
4.5
|
3.7
|
1.0
|
N
|
A:LYS21
|
4.5
|
9.9
|
1.0
|
O
|
A:HOH229
|
4.6
|
35.5
|
1.0
|
O
|
A:HOH200
|
4.7
|
27.0
|
1.0
|
CB
|
A:ASP22
|
4.7
|
11.8
|
1.0
|
CA
|
A:ASP24
|
4.8
|
3.5
|
1.0
|
N
|
A:GLY25
|
4.8
|
2.2
|
1.0
|
CB
|
A:THR26
|
4.8
|
3.9
|
1.0
|
CA
|
A:ASP22
|
4.8
|
14.3
|
1.0
|
O
|
A:ASP20
|
4.9
|
12.7
|
1.0
|
C
|
A:ASP22
|
4.9
|
11.9
|
1.0
|
|
Calcium binding site 2 out
of 4 in 1osa
Go back to
Calcium Binding Sites List in 1osa
Calcium binding site 2 out
of 4 in the Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca150
b:7.8
occ:1.00
|
O
|
A:THR62
|
2.2
|
8.2
|
1.0
|
OD1
|
A:ASP58
|
2.2
|
10.9
|
1.0
|
OD1
|
A:ASP56
|
2.2
|
10.5
|
1.0
|
O
|
A:HOH157
|
2.2
|
34.3
|
1.0
|
OD1
|
A:ASN60
|
2.3
|
14.2
|
1.0
|
OE1
|
A:GLU67
|
2.4
|
6.5
|
1.0
|
OE2
|
A:GLU67
|
2.6
|
5.4
|
1.0
|
CD
|
A:GLU67
|
2.9
|
9.4
|
1.0
|
CG
|
A:ASP58
|
3.2
|
15.9
|
1.0
|
CG
|
A:ASN60
|
3.3
|
18.3
|
1.0
|
CG
|
A:ASP56
|
3.4
|
15.1
|
1.0
|
C
|
A:THR62
|
3.4
|
3.4
|
1.0
|
OD2
|
A:ASP58
|
3.6
|
16.8
|
1.0
|
O
|
A:HOH201
|
3.7
|
17.1
|
1.0
|
ND2
|
A:ASN60
|
3.9
|
12.2
|
1.0
|
OD2
|
A:ASP56
|
4.2
|
16.0
|
1.0
|
N
|
A:ASN60
|
4.2
|
17.6
|
1.0
|
N
|
A:ASP58
|
4.3
|
21.6
|
1.0
|
N
|
A:ILE63
|
4.4
|
8.1
|
1.0
|
CG
|
A:GLU67
|
4.4
|
9.2
|
1.0
|
N
|
A:THR62
|
4.4
|
8.6
|
1.0
|
CB
|
A:ASP56
|
4.4
|
14.6
|
1.0
|
CA
|
A:ASP56
|
4.4
|
14.7
|
1.0
|
CB
|
A:ASP58
|
4.4
|
15.4
|
1.0
|
CA
|
A:ILE63
|
4.4
|
5.6
|
1.0
|
N
|
A:GLY59
|
4.5
|
18.9
|
1.0
|
CB
|
A:ASN60
|
4.5
|
15.5
|
1.0
|
CA
|
A:THR62
|
4.5
|
9.6
|
1.0
|
C
|
A:ASP56
|
4.6
|
15.8
|
1.0
|
N
|
A:ALA57
|
4.6
|
15.2
|
1.0
|
N
|
A:ASP64
|
4.7
|
8.3
|
1.0
|
OD2
|
A:ASP64
|
4.7
|
15.3
|
1.0
|
CA
|
A:ASP58
|
4.7
|
20.3
|
1.0
|
O
|
A:HOH158
|
4.7
|
27.3
|
1.0
|
OG1
|
A:THR62
|
4.8
|
9.4
|
1.0
|
CA
|
A:ASN60
|
4.8
|
15.1
|
1.0
|
C
|
A:ASP58
|
4.8
|
20.3
|
1.0
|
CG
|
A:ASP64
|
4.9
|
9.3
|
1.0
|
N
|
A:GLY61
|
4.9
|
10.2
|
1.0
|
C
|
A:ILE63
|
5.0
|
5.3
|
1.0
|
|
Calcium binding site 3 out
of 4 in 1osa
Go back to
Calcium Binding Sites List in 1osa
Calcium binding site 3 out
of 4 in the Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca151
b:15.5
occ:1.00
|
O
|
A:LEU99
|
2.1
|
16.7
|
1.0
|
OD1
|
A:ASP93
|
2.2
|
19.5
|
1.0
|
O
|
A:HOH189
|
2.4
|
27.4
|
1.0
|
OE1
|
A:GLU104
|
2.4
|
13.6
|
1.0
|
OD1
|
A:ASP95
|
2.4
|
25.9
|
1.0
|
OD1
|
A:ASN97
|
2.4
|
16.6
|
1.0
|
OE2
|
A:GLU104
|
2.5
|
12.8
|
1.0
|
CD
|
A:GLU104
|
2.8
|
13.5
|
1.0
|
CG
|
A:ASP95
|
3.3
|
26.8
|
1.0
|
C
|
A:LEU99
|
3.3
|
16.9
|
1.0
|
CG
|
A:ASP93
|
3.4
|
18.4
|
1.0
|
CG
|
A:ASN97
|
3.5
|
11.7
|
1.0
|
OD2
|
A:ASP95
|
3.7
|
27.0
|
1.0
|
OD2
|
A:ASP93
|
4.1
|
20.2
|
1.0
|
N
|
A:LEU99
|
4.2
|
15.5
|
1.0
|
N
|
A:ASN97
|
4.2
|
20.7
|
1.0
|
N
|
A:ASP95
|
4.2
|
20.1
|
1.0
|
N
|
A:ILE100
|
4.2
|
10.5
|
1.0
|
ND2
|
A:ASN97
|
4.2
|
13.6
|
1.0
|
CA
|
A:LEU99
|
4.3
|
14.7
|
1.0
|
CA
|
A:ILE100
|
4.3
|
12.9
|
1.0
|
CG
|
A:GLU104
|
4.3
|
8.8
|
1.0
|
CA
|
A:ASP93
|
4.3
|
15.8
|
1.0
|
CB
|
A:ASP93
|
4.4
|
16.2
|
1.0
|
C
|
A:ASP93
|
4.4
|
19.1
|
1.0
|
CB
|
A:ASP95
|
4.4
|
23.8
|
1.0
|
N
|
A:SER101
|
4.5
|
10.2
|
1.0
|
CB
|
A:ASN97
|
4.5
|
17.4
|
1.0
|
N
|
A:ARG94
|
4.6
|
19.4
|
1.0
|
CB
|
A:LEU99
|
4.6
|
15.6
|
1.0
|
CA
|
A:ASP95
|
4.7
|
21.6
|
1.0
|
N
|
A:GLY96
|
4.7
|
22.0
|
1.0
|
CA
|
A:ASN97
|
4.8
|
16.7
|
1.0
|
C
|
A:ILE100
|
4.8
|
16.1
|
1.0
|
O
|
A:ASP93
|
4.8
|
20.2
|
1.0
|
O
|
A:HOH276
|
4.9
|
55.8
|
1.0
|
C
|
A:ASP95
|
4.9
|
22.2
|
1.0
|
N
|
A:GLY98
|
4.9
|
18.3
|
1.0
|
|
Calcium binding site 4 out
of 4 in 1osa
Go back to
Calcium Binding Sites List in 1osa
Calcium binding site 4 out
of 4 in the Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Recombinant Paramecium Tetraurelia Calmodulin at 1.68 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca152
b:10.0
occ:1.00
|
OD1
|
A:ASP129
|
2.0
|
9.0
|
1.0
|
OD1
|
A:ASP131
|
2.1
|
17.7
|
1.0
|
OD1
|
A:ASP133
|
2.2
|
14.1
|
1.0
|
O
|
A:HOH181
|
2.2
|
13.2
|
1.0
|
O
|
A:HIS135
|
2.3
|
16.5
|
1.0
|
OE1
|
A:GLU140
|
2.5
|
17.5
|
1.0
|
OE2
|
A:GLU140
|
2.7
|
17.2
|
1.0
|
CD
|
A:GLU140
|
3.0
|
15.9
|
1.0
|
CG
|
A:ASP131
|
3.2
|
18.7
|
1.0
|
CG
|
A:ASP129
|
3.2
|
10.7
|
1.0
|
CG
|
A:ASP133
|
3.3
|
15.6
|
1.0
|
C
|
A:HIS135
|
3.5
|
16.2
|
1.0
|
OD2
|
A:ASP131
|
3.7
|
18.8
|
1.0
|
OD2
|
A:ASP133
|
3.8
|
14.5
|
1.0
|
OD2
|
A:ASP129
|
3.9
|
15.4
|
1.0
|
N
|
A:ASP133
|
4.1
|
20.8
|
1.0
|
N
|
A:HIS135
|
4.1
|
14.9
|
1.0
|
N
|
A:ASP131
|
4.2
|
17.5
|
1.0
|
CB
|
A:ASP129
|
4.2
|
9.2
|
1.0
|
CA
|
A:HIS135
|
4.3
|
15.6
|
1.0
|
CA
|
A:ASP129
|
4.4
|
12.2
|
1.0
|
N
|
A:GLY132
|
4.4
|
20.9
|
1.0
|
N
|
A:ILE136
|
4.4
|
15.1
|
1.0
|
CB
|
A:ASP131
|
4.4
|
20.7
|
1.0
|
N
|
A:ILE130
|
4.4
|
16.9
|
1.0
|
CG
|
A:GLU140
|
4.5
|
15.9
|
1.0
|
CB
|
A:ASP133
|
4.5
|
17.1
|
1.0
|
CA
|
A:ILE136
|
4.5
|
13.4
|
1.0
|
N
|
A:ASN137
|
4.5
|
9.0
|
1.0
|
CA
|
A:ASP131
|
4.6
|
18.3
|
1.0
|
N
|
A:GLY134
|
4.7
|
17.0
|
1.0
|
C
|
A:ASP131
|
4.7
|
19.9
|
1.0
|
CA
|
A:ASP133
|
4.7
|
18.2
|
1.0
|
CB
|
A:HIS135
|
4.8
|
11.8
|
1.0
|
C
|
A:ASP129
|
4.9
|
15.2
|
1.0
|
C
|
A:ASP133
|
4.9
|
17.4
|
1.0
|
C
|
A:ILE136
|
4.9
|
12.8
|
1.0
|
|
Reference:
C.Ban,
B.Ramakrishnan,
K.Y.Ling,
C.Kung,
M.Sundaralingam.
Structure of the Recombinant Paramecium Tetraurelia Calmodulin at 1.68 A Resolution. Acta Crystallogr.,Sect.D V. 50 50 1994.
ISSN: ISSN 0907-4449
PubMed: 15299476
DOI: 10.1107/S0907444993007991
Page generated: Thu Jul 11 13:29:02 2024
|