Calcium in PDB 1oux: Lecb (Pa-Lii) Sugar-Free
Protein crystallography data
The structure of Lecb (Pa-Lii) Sugar-Free, PDB code: 1oux
was solved by
R.Loris,
D.Tielker,
K.-E.Jaeger,
L.Wyns,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
15.00 /
2.00
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
49.190,
72.900,
100.180,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
18.7 /
22.8
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Lecb (Pa-Lii) Sugar-Free
(pdb code 1oux). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Lecb (Pa-Lii) Sugar-Free, PDB code: 1oux:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 1oux
Go back to
Calcium Binding Sites List in 1oux
Calcium binding site 1 out
of 8 in the Lecb (Pa-Lii) Sugar-Free
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Lecb (Pa-Lii) Sugar-Free within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca401
b:12.5
occ:1.00
|
OD1
|
A:ASP99
|
2.4
|
16.2
|
1.0
|
|
OD2
|
A:ASP104
|
2.4
|
12.9
|
1.0
|
|
OE2
|
A:GLU95
|
2.5
|
15.3
|
1.0
|
|
OD1
|
A:ASP104
|
2.5
|
9.4
|
1.0
|
|
O
|
A:HOH509
|
2.5
|
5.7
|
1.0
|
|
O
|
A:HOH512
|
2.5
|
15.4
|
1.0
|
|
OD1
|
A:ASP101
|
2.6
|
11.5
|
1.0
|
|
OE1
|
A:GLU95
|
2.6
|
12.2
|
1.0
|
|
CG
|
A:ASP104
|
2.8
|
12.2
|
1.0
|
|
CD
|
A:GLU95
|
2.9
|
13.6
|
1.0
|
|
CG
|
A:ASP99
|
3.3
|
16.6
|
1.0
|
|
CG
|
A:ASP101
|
3.4
|
12.8
|
1.0
|
|
OD2
|
A:ASP99
|
3.6
|
14.7
|
1.0
|
|
OD2
|
A:ASP101
|
3.7
|
13.0
|
1.0
|
|
CA
|
A:CA402
|
3.7
|
14.1
|
1.0
|
|
O4
|
A:SO4503
|
4.0
|
33.5
|
1.0
|
|
O
|
A:HOH511
|
4.1
|
10.4
|
1.0
|
|
N
|
A:ASP101
|
4.2
|
11.9
|
1.0
|
|
OD1
|
A:ASP96
|
4.3
|
10.7
|
1.0
|
|
CB
|
A:ASP104
|
4.3
|
10.8
|
1.0
|
|
CG
|
A:GLU95
|
4.3
|
12.0
|
1.0
|
|
N
|
A:GLY97
|
4.4
|
12.5
|
1.0
|
|
N
|
A:ASP96
|
4.5
|
11.5
|
1.0
|
|
N
|
A:ASN100
|
4.6
|
12.7
|
1.0
|
|
N
|
A:TYR102
|
4.6
|
10.9
|
1.0
|
|
CB
|
A:ASP101
|
4.7
|
13.4
|
1.0
|
|
CA
|
A:GLU95
|
4.7
|
10.7
|
1.0
|
|
CB
|
A:ASP99
|
4.7
|
15.1
|
1.0
|
|
OD1
|
A:ASN103
|
4.7
|
5.3
|
1.0
|
|
N
|
A:ASP104
|
4.8
|
12.3
|
1.0
|
|
CG
|
A:ASP96
|
4.9
|
12.3
|
1.0
|
|
CA
|
A:ASP101
|
4.9
|
11.7
|
1.0
|
|
N
|
A:ASP99
|
4.9
|
13.1
|
1.0
|
|
CA
|
A:GLY97
|
4.9
|
11.9
|
1.0
|
|
CB
|
A:GLU95
|
5.0
|
11.8
|
1.0
|
|
O
|
B:HOH417
|
5.0
|
9.6
|
1.0
|
|
Calcium binding site 2 out
of 8 in 1oux
Go back to
Calcium Binding Sites List in 1oux
Calcium binding site 2 out
of 8 in the Lecb (Pa-Lii) Sugar-Free
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Lecb (Pa-Lii) Sugar-Free within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca402
b:14.1
occ:1.00
|
OD1
|
A:ASN103
|
2.3
|
5.3
|
1.0
|
|
O
|
A:ASN21
|
2.4
|
11.0
|
1.0
|
|
O
|
A:HOH509
|
2.4
|
5.7
|
1.0
|
|
O
|
B:HOH417
|
2.5
|
9.6
|
1.0
|
|
OD1
|
A:ASP104
|
2.5
|
9.4
|
1.0
|
|
OD2
|
A:ASP101
|
2.5
|
13.0
|
1.0
|
|
O
|
B:GLY114
|
2.6
|
17.6
|
1.0
|
|
CG
|
A:ASP101
|
3.2
|
12.8
|
1.0
|
|
OD1
|
A:ASP101
|
3.2
|
11.5
|
1.0
|
|
C
|
B:GLY114
|
3.3
|
20.7
|
1.0
|
|
OXT
|
B:GLY114
|
3.4
|
24.2
|
1.0
|
|
CG
|
A:ASN103
|
3.4
|
8.3
|
1.0
|
|
C
|
A:ASN21
|
3.6
|
11.4
|
1.0
|
|
CG
|
A:ASP104
|
3.7
|
12.2
|
1.0
|
|
CA
|
A:CA401
|
3.7
|
12.5
|
1.0
|
|
ND2
|
A:ASN103
|
3.8
|
6.5
|
1.0
|
|
N
|
A:ASP104
|
4.0
|
12.3
|
1.0
|
|
CA
|
A:ASP104
|
4.1
|
11.8
|
1.0
|
|
CB
|
A:ASN21
|
4.2
|
11.9
|
1.0
|
|
O4
|
A:SO4503
|
4.3
|
33.5
|
1.0
|
|
C
|
A:ASN103
|
4.4
|
11.9
|
1.0
|
|
CA
|
A:SER22
|
4.5
|
11.6
|
1.0
|
|
CB
|
A:ASP104
|
4.5
|
10.8
|
1.0
|
|
N
|
A:SER22
|
4.5
|
10.6
|
1.0
|
|
OD2
|
A:ASP99
|
4.5
|
14.7
|
1.0
|
|
CA
|
A:ASN21
|
4.6
|
11.7
|
1.0
|
|
OD2
|
A:ASP104
|
4.6
|
12.9
|
1.0
|
|
CB
|
A:SER22
|
4.6
|
10.4
|
1.0
|
|
CB
|
A:ASP101
|
4.6
|
13.4
|
1.0
|
|
CA
|
B:GLY114
|
4.7
|
20.4
|
1.0
|
|
O
|
B:HOH415
|
4.7
|
14.2
|
1.0
|
|
O1
|
A:SO4503
|
4.7
|
31.7
|
1.0
|
|
CB
|
A:ASN103
|
4.7
|
8.7
|
1.0
|
|
O
|
A:ASN103
|
4.9
|
11.7
|
1.0
|
|
N
|
A:ASN103
|
4.9
|
9.5
|
1.0
|
|
O
|
A:HOH512
|
4.9
|
15.4
|
1.0
|
|
CA
|
A:ASN103
|
5.0
|
10.5
|
1.0
|
|
Calcium binding site 3 out
of 8 in 1oux
Go back to
Calcium Binding Sites List in 1oux
Calcium binding site 3 out
of 8 in the Lecb (Pa-Lii) Sugar-Free
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Lecb (Pa-Lii) Sugar-Free within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca403
b:8.7
occ:1.00
|
OE2
|
B:GLU95
|
2.3
|
11.8
|
1.0
|
|
OD1
|
B:ASP99
|
2.4
|
13.4
|
1.0
|
|
OD1
|
B:ASP101
|
2.4
|
8.6
|
1.0
|
|
O
|
B:HOH407
|
2.5
|
12.1
|
1.0
|
|
OE1
|
B:GLU95
|
2.6
|
10.7
|
1.0
|
|
OD2
|
B:ASP104
|
2.6
|
7.9
|
1.0
|
|
O
|
B:HOH406
|
2.6
|
10.9
|
1.0
|
|
OD1
|
B:ASP104
|
2.6
|
5.7
|
1.0
|
|
CD
|
B:GLU95
|
2.8
|
11.4
|
1.0
|
|
CG
|
B:ASP104
|
2.9
|
10.0
|
1.0
|
|
CG
|
B:ASP99
|
3.4
|
13.0
|
1.0
|
|
CG
|
B:ASP101
|
3.5
|
11.0
|
1.0
|
|
OD2
|
B:ASP99
|
3.7
|
13.7
|
1.0
|
|
CA
|
B:CA404
|
3.8
|
11.3
|
1.0
|
|
OD2
|
B:ASP101
|
3.9
|
11.0
|
1.0
|
|
CG
|
B:GLU95
|
4.2
|
10.7
|
1.0
|
|
N
|
B:ASP101
|
4.3
|
9.5
|
1.0
|
|
OD1
|
B:ASP96
|
4.4
|
8.0
|
1.0
|
|
CB
|
B:ASP104
|
4.4
|
10.0
|
1.0
|
|
N
|
B:GLY97
|
4.5
|
12.0
|
1.0
|
|
N
|
B:TYR102
|
4.5
|
7.4
|
1.0
|
|
N
|
B:ASP96
|
4.5
|
11.0
|
1.0
|
|
CB
|
B:ASP101
|
4.7
|
11.5
|
1.0
|
|
CA
|
B:GLU95
|
4.7
|
11.4
|
1.0
|
|
OD1
|
B:ASN103
|
4.7
|
6.8
|
1.0
|
|
CB
|
B:ASP99
|
4.7
|
12.6
|
1.0
|
|
N
|
B:ASP99
|
4.9
|
12.3
|
1.0
|
|
CB
|
B:GLU95
|
4.9
|
10.0
|
1.0
|
|
N
|
B:ASN100
|
4.9
|
11.7
|
1.0
|
|
CA
|
B:GLY97
|
4.9
|
12.0
|
1.0
|
|
CA
|
B:ASP101
|
4.9
|
9.1
|
1.0
|
|
N
|
B:ASP104
|
4.9
|
8.0
|
1.0
|
|
CG
|
B:ASP96
|
5.0
|
12.6
|
1.0
|
|
Calcium binding site 4 out
of 8 in 1oux
Go back to
Calcium Binding Sites List in 1oux
Calcium binding site 4 out
of 8 in the Lecb (Pa-Lii) Sugar-Free
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Lecb (Pa-Lii) Sugar-Free within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca404
b:11.3
occ:1.00
|
OD2
|
B:ASP101
|
2.4
|
11.0
|
1.0
|
|
O
|
B:ASN21
|
2.4
|
9.0
|
1.0
|
|
OD1
|
B:ASN103
|
2.4
|
6.8
|
1.0
|
|
O
|
A:HOH504
|
2.5
|
12.8
|
1.0
|
|
O
|
A:GLY114
|
2.6
|
15.2
|
1.0
|
|
O
|
B:HOH406
|
2.6
|
10.9
|
1.0
|
|
OD1
|
B:ASP104
|
2.7
|
5.7
|
1.0
|
|
CG
|
B:ASP101
|
3.2
|
11.0
|
1.0
|
|
OD1
|
B:ASP101
|
3.3
|
8.6
|
1.0
|
|
C
|
A:GLY114
|
3.4
|
15.3
|
1.0
|
|
CG
|
B:ASN103
|
3.4
|
9.0
|
1.0
|
|
OXT
|
A:GLY114
|
3.5
|
19.4
|
1.0
|
|
C
|
B:ASN21
|
3.6
|
8.6
|
1.0
|
|
ND2
|
B:ASN103
|
3.7
|
8.8
|
1.0
|
|
CA
|
B:CA403
|
3.8
|
8.7
|
1.0
|
|
CG
|
B:ASP104
|
3.9
|
10.0
|
1.0
|
|
O
|
A:HOH506
|
4.1
|
37.8
|
1.0
|
|
N
|
B:ASP104
|
4.1
|
8.0
|
1.0
|
|
CB
|
B:ASN21
|
4.2
|
9.3
|
1.0
|
|
CA
|
B:ASP104
|
4.3
|
8.0
|
1.0
|
|
CA
|
B:SER22
|
4.3
|
10.8
|
1.0
|
|
N
|
B:SER22
|
4.4
|
8.9
|
1.0
|
|
O
|
A:HOH507
|
4.5
|
13.2
|
1.0
|
|
C
|
B:ASN103
|
4.5
|
8.5
|
1.0
|
|
CA
|
B:ASN21
|
4.5
|
9.4
|
1.0
|
|
CB
|
B:ASP101
|
4.6
|
11.5
|
1.0
|
|
CB
|
B:SER22
|
4.6
|
9.3
|
1.0
|
|
OD2
|
B:ASP99
|
4.6
|
13.7
|
1.0
|
|
CB
|
B:ASP104
|
4.7
|
10.0
|
1.0
|
|
CA
|
A:GLY114
|
4.7
|
15.4
|
1.0
|
|
OD2
|
B:ASP104
|
4.7
|
7.9
|
1.0
|
|
CB
|
B:ASN103
|
4.8
|
5.0
|
1.0
|
|
O
|
B:HOH408
|
4.8
|
25.2
|
1.0
|
|
N
|
B:ASN103
|
4.9
|
8.3
|
1.0
|
|
O
|
B:ASN103
|
5.0
|
9.3
|
1.0
|
|
Calcium binding site 5 out
of 8 in 1oux
Go back to
Calcium Binding Sites List in 1oux
Calcium binding site 5 out
of 8 in the Lecb (Pa-Lii) Sugar-Free
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Lecb (Pa-Lii) Sugar-Free within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca405
b:11.9
occ:1.00
|
OD1
|
C:ASP101
|
2.3
|
9.7
|
1.0
|
|
OE2
|
C:GLU95
|
2.4
|
14.0
|
1.0
|
|
OD1
|
C:ASP99
|
2.4
|
12.6
|
1.0
|
|
O
|
C:HOH408
|
2.4
|
14.1
|
1.0
|
|
OE1
|
C:GLU95
|
2.5
|
9.3
|
1.0
|
|
O
|
C:HOH410
|
2.6
|
11.2
|
1.0
|
|
OD1
|
C:ASP104
|
2.6
|
15.2
|
1.0
|
|
OD2
|
C:ASP104
|
2.7
|
13.6
|
1.0
|
|
CD
|
C:GLU95
|
2.8
|
12.4
|
1.0
|
|
CG
|
C:ASP104
|
3.0
|
16.4
|
1.0
|
|
CG
|
C:ASP101
|
3.3
|
12.7
|
1.0
|
|
CG
|
C:ASP99
|
3.4
|
18.1
|
1.0
|
|
OD2
|
C:ASP99
|
3.6
|
17.9
|
1.0
|
|
OD2
|
C:ASP101
|
3.7
|
16.1
|
1.0
|
|
CA
|
C:CA406
|
3.9
|
12.8
|
1.0
|
|
N
|
C:ASP101
|
4.0
|
10.8
|
1.0
|
|
O
|
C:HOH407
|
4.1
|
24.0
|
1.0
|
|
CG
|
C:GLU95
|
4.2
|
6.7
|
1.0
|
|
CB
|
C:ASP101
|
4.4
|
11.4
|
1.0
|
|
N
|
C:TYR102
|
4.4
|
9.9
|
1.0
|
|
OD1
|
C:ASP96
|
4.4
|
13.3
|
1.0
|
|
N
|
C:GLY97
|
4.5
|
15.0
|
1.0
|
|
CB
|
C:ASP104
|
4.5
|
13.5
|
1.0
|
|
N
|
C:ASN100
|
4.6
|
13.5
|
1.0
|
|
N
|
C:ASP96
|
4.6
|
12.2
|
1.0
|
|
CA
|
C:ASP101
|
4.7
|
10.1
|
1.0
|
|
CA
|
C:GLU95
|
4.7
|
10.9
|
1.0
|
|
CB
|
C:ASP99
|
4.8
|
14.3
|
1.0
|
|
OD1
|
C:ASN103
|
4.8
|
6.7
|
1.0
|
|
N
|
C:ASP99
|
4.9
|
12.0
|
1.0
|
|
CA
|
C:GLY97
|
4.9
|
14.9
|
1.0
|
|
CB
|
C:GLU95
|
4.9
|
12.2
|
1.0
|
|
N
|
C:ASP104
|
4.9
|
12.2
|
1.0
|
|
C
|
C:ASP99
|
5.0
|
13.2
|
1.0
|
|
C
|
C:ASP101
|
5.0
|
10.3
|
1.0
|
|
Calcium binding site 6 out
of 8 in 1oux
Go back to
Calcium Binding Sites List in 1oux
Calcium binding site 6 out
of 8 in the Lecb (Pa-Lii) Sugar-Free
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Lecb (Pa-Lii) Sugar-Free within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca406
b:12.8
occ:1.00
|
OD2
|
C:ASP101
|
2.3
|
16.1
|
1.0
|
|
OD1
|
C:ASN103
|
2.4
|
6.7
|
1.0
|
|
O
|
C:ASN21
|
2.4
|
13.6
|
1.0
|
|
O
|
C:HOH410
|
2.5
|
11.2
|
1.0
|
|
O
|
D:GLY114
|
2.5
|
16.9
|
1.0
|
|
O
|
D:HOH413
|
2.6
|
16.4
|
1.0
|
|
OD1
|
C:ASP104
|
2.8
|
15.2
|
1.0
|
|
CG
|
C:ASP101
|
3.2
|
12.7
|
1.0
|
|
C
|
D:GLY114
|
3.2
|
20.0
|
1.0
|
|
OXT
|
D:GLY114
|
3.3
|
22.7
|
1.0
|
|
CG
|
C:ASN103
|
3.4
|
9.9
|
1.0
|
|
OD1
|
C:ASP101
|
3.4
|
9.7
|
1.0
|
|
C
|
C:ASN21
|
3.6
|
13.8
|
1.0
|
|
ND2
|
C:ASN103
|
3.7
|
7.3
|
1.0
|
|
CA
|
C:CA405
|
3.9
|
11.9
|
1.0
|
|
CG
|
C:ASP104
|
3.9
|
16.4
|
1.0
|
|
N
|
C:ASP104
|
4.1
|
12.2
|
1.0
|
|
CB
|
C:ASN21
|
4.1
|
14.4
|
1.0
|
|
CA
|
C:ASP104
|
4.2
|
13.2
|
1.0
|
|
N
|
C:SER22
|
4.5
|
14.5
|
1.0
|
|
CA
|
C:SER22
|
4.5
|
13.9
|
1.0
|
|
C
|
C:ASN103
|
4.5
|
10.0
|
1.0
|
|
CA
|
C:ASN21
|
4.5
|
12.6
|
1.0
|
|
CB
|
C:ASP101
|
4.6
|
11.4
|
1.0
|
|
CA
|
D:GLY114
|
4.6
|
19.1
|
1.0
|
|
OD2
|
C:ASP99
|
4.6
|
17.9
|
1.0
|
|
CB
|
C:ASP104
|
4.7
|
13.5
|
1.0
|
|
CB
|
C:ASN103
|
4.7
|
9.2
|
1.0
|
|
O
|
C:HOH408
|
4.7
|
14.1
|
1.0
|
|
CB
|
C:SER22
|
4.8
|
13.3
|
1.0
|
|
OD2
|
C:ASP104
|
4.8
|
13.6
|
1.0
|
|
N
|
C:ASN103
|
4.9
|
8.6
|
1.0
|
|
O
|
C:ASN103
|
5.0
|
12.9
|
1.0
|
|
Calcium binding site 7 out
of 8 in 1oux
Go back to
Calcium Binding Sites List in 1oux
Calcium binding site 7 out
of 8 in the Lecb (Pa-Lii) Sugar-Free
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Lecb (Pa-Lii) Sugar-Free within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca407
b:15.3
occ:1.00
|
OD2
|
D:ASP99
|
2.3
|
21.9
|
1.0
|
|
OE2
|
D:GLU95
|
2.4
|
12.9
|
1.0
|
|
OD2
|
D:ASP101
|
2.4
|
20.6
|
1.0
|
|
O
|
D:HOH414
|
2.4
|
9.4
|
1.0
|
|
OE1
|
D:GLU95
|
2.4
|
12.2
|
1.0
|
|
OD2
|
D:ASP104
|
2.5
|
8.9
|
1.0
|
|
OD1
|
D:ASP104
|
2.6
|
11.5
|
1.0
|
|
CD
|
D:GLU95
|
2.7
|
12.8
|
1.0
|
|
O
|
D:HOH415
|
2.8
|
13.2
|
1.0
|
|
CG
|
D:ASP104
|
2.9
|
10.3
|
1.0
|
|
CG
|
D:ASP99
|
3.1
|
20.5
|
1.0
|
|
OD1
|
D:ASP99
|
3.3
|
24.1
|
1.0
|
|
CG
|
D:ASP101
|
3.3
|
18.6
|
1.0
|
|
OD1
|
D:ASP101
|
3.7
|
17.6
|
1.0
|
|
CA
|
D:CA408
|
3.8
|
14.3
|
1.0
|
|
N
|
D:ASP101
|
4.1
|
16.9
|
1.0
|
|
CG
|
D:GLU95
|
4.2
|
10.8
|
1.0
|
|
OD1
|
D:ASP96
|
4.4
|
19.2
|
1.0
|
|
CB
|
D:ASP104
|
4.4
|
12.8
|
1.0
|
|
N
|
D:GLY97
|
4.4
|
15.9
|
1.0
|
|
N
|
D:ASP96
|
4.4
|
11.4
|
1.0
|
|
O
|
D:HOH444
|
4.5
|
23.1
|
1.0
|
|
N
|
D:ASN100
|
4.5
|
18.5
|
1.0
|
|
N
|
D:TYR102
|
4.5
|
15.2
|
1.0
|
|
CB
|
D:ASP101
|
4.5
|
17.7
|
1.0
|
|
CB
|
D:ASP99
|
4.6
|
21.4
|
1.0
|
|
CA
|
D:GLU95
|
4.6
|
11.1
|
1.0
|
|
N
|
D:ASP99
|
4.7
|
18.6
|
1.0
|
|
O
|
C:HOH487
|
4.7
|
38.0
|
1.0
|
|
CA
|
D:ASP101
|
4.8
|
16.6
|
1.0
|
|
OD1
|
D:ASN103
|
4.8
|
8.3
|
1.0
|
|
CB
|
D:GLU95
|
4.8
|
10.3
|
1.0
|
|
CA
|
D:GLY97
|
4.9
|
14.6
|
1.0
|
|
N
|
D:ASP104
|
4.9
|
12.4
|
1.0
|
|
CG
|
D:ASP96
|
4.9
|
18.1
|
1.0
|
|
C
|
D:ASP99
|
5.0
|
20.6
|
1.0
|
|
CA
|
D:ASP99
|
5.0
|
19.8
|
1.0
|
|
Calcium binding site 8 out
of 8 in 1oux
Go back to
Calcium Binding Sites List in 1oux
Calcium binding site 8 out
of 8 in the Lecb (Pa-Lii) Sugar-Free
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Lecb (Pa-Lii) Sugar-Free within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca408
b:14.3
occ:1.00
|
OD1
|
D:ASP101
|
2.3
|
17.6
|
1.0
|
|
O
|
D:ASN21
|
2.4
|
12.1
|
1.0
|
|
O
|
C:HOH487
|
2.4
|
38.0
|
1.0
|
|
O
|
D:HOH415
|
2.4
|
13.2
|
1.0
|
|
OD1
|
D:ASN103
|
2.4
|
8.3
|
1.0
|
|
OD1
|
D:ASP104
|
2.5
|
11.5
|
1.0
|
|
O
|
C:GLY114
|
2.6
|
25.1
|
1.0
|
|
CG
|
D:ASP101
|
3.2
|
18.6
|
1.0
|
|
C
|
C:GLY114
|
3.2
|
23.5
|
1.0
|
|
OXT
|
C:GLY114
|
3.2
|
28.1
|
1.0
|
|
OD2
|
D:ASP101
|
3.3
|
20.6
|
1.0
|
|
CG
|
D:ASN103
|
3.5
|
10.3
|
1.0
|
|
C
|
D:ASN21
|
3.6
|
12.4
|
1.0
|
|
CG
|
D:ASP104
|
3.7
|
10.3
|
1.0
|
|
CA
|
D:CA407
|
3.8
|
15.3
|
1.0
|
|
ND2
|
D:ASN103
|
3.9
|
11.9
|
1.0
|
|
N
|
D:ASP104
|
4.0
|
12.4
|
1.0
|
|
CA
|
D:ASP104
|
4.1
|
10.3
|
1.0
|
|
OD1
|
D:ASP99
|
4.3
|
24.1
|
1.0
|
|
CA
|
D:SER22
|
4.3
|
13.7
|
1.0
|
|
CB
|
D:ASN21
|
4.3
|
10.4
|
1.0
|
|
O
|
D:HOH443
|
4.4
|
34.8
|
1.0
|
|
N
|
D:SER22
|
4.4
|
12.2
|
1.0
|
|
CB
|
D:ASP104
|
4.5
|
12.8
|
1.0
|
|
CB
|
D:SER22
|
4.5
|
15.9
|
1.0
|
|
C
|
D:ASN103
|
4.5
|
11.7
|
1.0
|
|
OD2
|
D:ASP104
|
4.5
|
8.9
|
1.0
|
|
CB
|
D:ASP101
|
4.6
|
17.7
|
1.0
|
|
CA
|
D:ASN21
|
4.6
|
10.5
|
1.0
|
|
CA
|
C:GLY114
|
4.6
|
21.4
|
1.0
|
|
O
|
D:HOH414
|
4.8
|
9.4
|
1.0
|
|
CB
|
D:ASN103
|
4.8
|
10.7
|
1.0
|
|
N
|
D:ASN103
|
4.9
|
13.4
|
1.0
|
|
Reference:
R.Loris,
D.Tielker,
K.-E.Jaeger,
L.Wyns.
Structural Basis of Carbohydrate Recognition By the Lectin Lecb From Pseudomonas Aeruginosa J.Mol.Biol. V. 331 861 2003.
ISSN: ISSN 0022-2836
PubMed: 12909014
DOI: 10.1016/S0022-2836(03)00754-X
Page generated: Sat Dec 12 03:13:13 2020
|
