Atomistry » Calcium » PDB 1ova-1pif » 1oyo
Atomistry »
  Calcium »
    PDB 1ova-1pif »
      1oyo »

Calcium in PDB 1oyo: Regulation of Protease Activity By Melanin: Crystal Structure of the Complex Formed Between Proteinase K and Melanin Monomers at 2.0 Resolution

Enzymatic activity of Regulation of Protease Activity By Melanin: Crystal Structure of the Complex Formed Between Proteinase K and Melanin Monomers at 2.0 Resolution

All present enzymatic activity of Regulation of Protease Activity By Melanin: Crystal Structure of the Complex Formed Between Proteinase K and Melanin Monomers at 2.0 Resolution:
3.4.21.64;

Protein crystallography data

The structure of Regulation of Protease Activity By Melanin: Crystal Structure of the Complex Formed Between Proteinase K and Melanin Monomers at 2.0 Resolution, PDB code: 1oyo was solved by N.Singh, S.Sharma, S.Kumar, G.Raman, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.71 / 2.02
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.319, 68.319, 108.292, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 19

Calcium Binding Sites:

The binding sites of Calcium atom in the Regulation of Protease Activity By Melanin: Crystal Structure of the Complex Formed Between Proteinase K and Melanin Monomers at 2.0 Resolution (pdb code 1oyo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Regulation of Protease Activity By Melanin: Crystal Structure of the Complex Formed Between Proteinase K and Melanin Monomers at 2.0 Resolution, PDB code: 1oyo:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1oyo

Go back to Calcium Binding Sites List in 1oyo
Calcium binding site 1 out of 2 in the Regulation of Protease Activity By Melanin: Crystal Structure of the Complex Formed Between Proteinase K and Melanin Monomers at 2.0 Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Regulation of Protease Activity By Melanin: Crystal Structure of the Complex Formed Between Proteinase K and Melanin Monomers at 2.0 Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1001

b:17.9
occ:1.00
O A:VAL177 2.5 15.5 1.0
O A:PRO175 2.5 12.9 1.0
OD1 A:ASP200 2.6 10.8 1.0
O A:HOH1004 2.7 20.2 1.0
O A:HOH1005 2.7 12.8 1.0
O A:HOH1006 2.7 12.9 1.0
OD2 A:ASP200 2.7 14.2 1.0
O A:HOH1003 2.7 18.7 1.0
CG A:ASP200 3.0 15.1 1.0
C A:PRO175 3.6 14.7 1.0
C A:VAL177 3.7 14.9 1.0
CA A:PRO175 4.2 15.3 1.0
N A:VAL177 4.2 15.6 1.0
O A:VAL198 4.3 16.2 1.0
O A:HOH1078 4.4 49.7 1.0
CB A:ASP200 4.4 12.7 1.0
C A:SER176 4.5 15.4 1.0
O A:GLU174 4.5 14.0 1.0
CA A:CYS178 4.5 12.5 1.0
O A:HOH1101 4.5 35.1 1.0
N A:SER176 4.6 12.4 1.0
N A:CYS178 4.6 13.3 1.0
N A:THR179 4.6 11.0 1.0
CA A:VAL177 4.6 14.2 1.0
O A:HOH1010 4.8 21.8 1.0
CA A:SER176 4.8 15.2 1.0
OG1 A:THR179 4.8 12.5 1.0
SG A:CYS249 4.9 12.8 1.0
O A:SER176 5.0 15.1 1.0

Calcium binding site 2 out of 2 in 1oyo

Go back to Calcium Binding Sites List in 1oyo
Calcium binding site 2 out of 2 in the Regulation of Protease Activity By Melanin: Crystal Structure of the Complex Formed Between Proteinase K and Melanin Monomers at 2.0 Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Regulation of Protease Activity By Melanin: Crystal Structure of the Complex Formed Between Proteinase K and Melanin Monomers at 2.0 Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1002

b:82.9
occ:0.40
O A:THR16 3.1 26.1 1.0
O A:HOH1007 3.4 41.9 1.0
OD2 A:ASP260 3.6 31.0 1.0
OD1 A:ASP260 3.9 36.2 1.0
O A:HOH1008 3.9 81.2 1.0
CG A:ASP260 4.1 30.2 1.0
C A:THR16 4.3 24.7 1.0
CG2 A:THR16 4.5 25.1 1.0
OG1 A:THR16 4.7 29.8 1.0
CB A:THR16 5.0 26.5 1.0

Reference:

N.Singh, S.Sharma, S.Kumar, G.Raman, T.P.Singh. Regulation of Protease Activity By Melanin: Crystal Structure of the Complex Formed Between Proteinase K and Melanin Monomers at 2.0 Resolution To Be Published.
Page generated: Thu Jul 11 13:37:25 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy