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Calcium in PDB 1p8x: The Calcium-Activated C-Terminal Half of Gelsolin

Protein crystallography data

The structure of The Calcium-Activated C-Terminal Half of Gelsolin, PDB code: 1p8x was solved by K.Narayan, L.D.Burtnick, R.C.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.750, 90.110, 156.940, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 24.5

Calcium Binding Sites:

The binding sites of Calcium atom in the The Calcium-Activated C-Terminal Half of Gelsolin (pdb code 1p8x). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the The Calcium-Activated C-Terminal Half of Gelsolin, PDB code: 1p8x:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Calcium binding site 1 out of 9 in 1p8x

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Calcium binding site 1 out of 9 in the The Calcium-Activated C-Terminal Half of Gelsolin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Calcium-Activated C-Terminal Half of Gelsolin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1001

b:24.3
occ:1.00
 OD1 A:ASP445 2.4 19.9 1.0
O A:GLY444 2.4 18.5 1.0
OE1 A:GLU475 2.5 24.9 1.0
O A:THR524 2.5 26.5 1.0
O A:HOH1110 2.5 26.0 1.0
O A:HOH1111 2.6 24.2 1.0
OE2 A:GLU475 2.8 21.2 1.0
CD A:GLU475 2.9 22.7 1.0
C A:GLY444 3.3 19.4 1.0
CG A:ASP445 3.6 21.2 1.0
C A:THR524 3.7 27.7 1.0
CA A:ASP445 3.8 16.6 1.0
N A:THR524 3.9 26.4 1.0
N A:ASP445 3.9 18.9 1.0
O A:HOH1019 4.2 20.2 1.0
CB A:ASP445 4.2 18.6 1.0
CA A:GLY444 4.3 19.0 1.0
O A:HOH1043 4.4 25.3 1.0
CA A:THR524 4.4 26.5 1.0
CG A:GLU475 4.4 23.2 1.0
OD2 A:ASP445 4.5 23.0 1.0
CG2 A:THR524 4.7 26.2 1.0
O A:HOH1180 4.7 26.5 1.0
O A:HOH1113 4.7 28.5 1.0
N A:SER525 4.7 28.4 1.0
O A:HOH1331 4.8 44.8 1.0
OG A:SER471 4.8 18.5 1.0
C A:GLY523 4.8 26.2 1.0
CA A:SER471 4.8 20.7 1.0
CA A:SER525 4.9 29.7 1.0
O A:HOH1317 4.9 43.5 1.0
N A:THR472 5.0 23.8 1.0
CB A:SER525 5.0 32.7 1.0
CA A:GLY523 5.0 24.7 1.0

Calcium binding site 2 out of 9 in 1p8x

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Calcium binding site 2 out of 9 in the The Calcium-Activated C-Terminal Half of Gelsolin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Calcium-Activated C-Terminal Half of Gelsolin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1002

b:20.1
occ:1.00
 O A:ASN564 2.4 17.3 1.0
OD1 A:ASP565 2.4 15.1 1.0
O A:HOH1193 2.4 20.4 1.0
OD1 A:ASN564 2.5 22.1 1.0
OE2 A:GLU587 2.5 16.8 1.0
O A:HOH1194 2.5 20.3 1.0
OE1 A:GLU587 2.7 18.9 1.0
CD A:GLU587 2.9 17.8 1.0
C A:ASN564 3.3 19.0 1.0
CG A:ASN564 3.4 24.4 1.0
CG A:ASP565 3.6 18.9 1.0
CA A:ASP565 3.9 18.6 1.0
N A:ASP565 4.0 18.5 1.0
CB A:ASN564 4.1 21.1 1.0
ND2 A:ASN564 4.2 25.3 1.0
CA A:ASN564 4.3 19.8 1.0
CB A:ASP565 4.3 17.3 1.0
CG A:GLU587 4.4 17.4 1.0
CG A:ARG542 4.4 17.3 1.0
O A:GLY582 4.5 24.1 1.0
OD2 A:ASP565 4.5 19.6 1.0
O A:HOH1307 4.6 50.1 1.0
O A:HOH1306 4.6 46.4 1.0
CA A:ALA583 4.6 21.5 1.0
NE A:ARG542 4.8 19.0 1.0
O A:HOH1308 4.8 48.4 1.0
O A:ALA543 4.8 21.2 1.0
CB A:ARG542 4.9 16.3 1.0
CA A:ARG542 5.0 15.2 1.0
N A:SER584 5.0 22.2 1.0
N A:ALA543 5.0 17.8 1.0

Calcium binding site 3 out of 9 in 1p8x

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Calcium binding site 3 out of 9 in the The Calcium-Activated C-Terminal Half of Gelsolin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Calcium-Activated C-Terminal Half of Gelsolin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1003

b:29.3
occ:1.00
 O A:ASP669 2.3 26.6 1.0
OE2 A:GLU692 2.4 31.6 1.0
O A:HOH1259 2.5 25.1 1.0
OD2 A:ASP670 2.6 33.6 1.0
O A:HOH1260 2.6 21.1 1.0
OE1 A:GLU692 2.7 30.2 1.0
O A:HOH1258 2.7 41.4 1.0
CD A:GLU692 2.9 30.6 1.0
C A:ASP669 3.5 27.0 1.0
CG A:ASP670 3.8 33.7 1.0
CA A:ASP670 4.1 24.9 1.0
N A:ASP670 4.3 24.3 1.0
CB A:ASP669 4.3 28.2 1.0
CG A:GLU692 4.3 31.6 1.0
CA A:ASP669 4.4 26.9 1.0
CG A:ASP669 4.5 32.5 1.0
CA A:SER688 4.5 23.3 1.0
CB A:ASP670 4.5 30.4 1.0
N A:GLN689 4.7 24.6 1.0
OD1 A:ASP670 4.7 37.0 1.0
O A:ASP687 4.8 26.1 1.0
OD2 A:ASP669 4.8 33.6 1.0
OD1 A:ASP669 4.9 31.0 1.0
CB A:SER688 5.0 20.9 1.0

Calcium binding site 4 out of 9 in 1p8x

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Calcium binding site 4 out of 9 in the The Calcium-Activated C-Terminal Half of Gelsolin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Calcium-Activated C-Terminal Half of Gelsolin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1001

b:22.4
occ:1.00
 O B:GLY444 2.4 18.9 1.0
OD1 B:ASP445 2.4 21.7 1.0
O B:THR524 2.4 21.7 1.0
O B:HOH1119 2.5 26.3 1.0
OE1 B:GLU475 2.5 25.4 1.0
O B:HOH1115 2.5 19.4 1.0
OE2 B:GLU475 2.6 23.7 1.0
CD B:GLU475 2.9 25.5 1.0
C B:GLY444 3.3 18.8 1.0
CG B:ASP445 3.6 21.7 1.0
C B:THR524 3.6 23.9 1.0
CA B:ASP445 3.9 18.5 1.0
N B:ASP445 4.0 17.6 1.0
N B:THR524 4.0 22.0 1.0
O B:HOH1021 4.2 21.8 1.0
CA B:GLY444 4.3 18.9 1.0
O B:HOH1036 4.3 24.8 1.0
CB B:ASP445 4.3 18.9 1.0
CG B:GLU475 4.4 23.0 1.0
CA B:THR524 4.4 22.7 1.0
OD2 B:ASP445 4.5 22.8 1.0
N B:SER525 4.6 22.6 1.0
O B:HOH1114 4.7 29.5 1.0
O B:HOH1120 4.7 38.5 1.0
CA B:SER525 4.7 24.2 1.0
CA B:SER471 4.7 22.8 1.0
CG2 B:THR524 4.7 21.3 1.0
O B:HOH1347 4.8 29.0 1.0
OG B:SER471 4.8 23.8 1.0
C B:GLY523 4.9 23.4 1.0
CB B:SER525 4.9 24.8 1.0
O B:HOH1123 5.0 44.0 1.0

Calcium binding site 5 out of 9 in 1p8x

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Calcium binding site 5 out of 9 in the The Calcium-Activated C-Terminal Half of Gelsolin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of The Calcium-Activated C-Terminal Half of Gelsolin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1002

b:20.0
occ:1.00
 OE2 B:GLU587 2.4 16.0 1.0
OD1 B:ASP565 2.4 17.4 1.0
O B:ASN564 2.4 19.4 1.0
OD1 B:ASN564 2.5 21.9 1.0
O B:HOH1155 2.6 18.8 1.0
O B:HOH1156 2.6 27.6 1.0
OE1 B:GLU587 2.7 16.5 1.0
CD B:GLU587 2.8 17.0 1.0
CG B:ASN564 3.3 21.8 1.0
C B:ASN564 3.3 19.0 1.0
CG B:ASP565 3.6 20.4 1.0
CA B:ASP565 3.9 17.2 1.0
N B:ASP565 4.0 17.2 1.0
CB B:ASN564 4.1 19.0 1.0
ND2 B:ASN564 4.1 21.1 1.0
CA B:ASN564 4.3 18.8 1.0
CG B:GLU587 4.3 16.9 1.0
CB B:ASP565 4.3 15.3 1.0
OD2 B:ASP565 4.4 21.2 1.0
O B:GLY582 4.5 19.8 1.0
O B:HOH1168 4.6 37.5 1.0
O B:HOH1144 4.6 54.8 1.0
CG B:ARG542 4.6 20.3 1.0
CA B:ALA583 4.7 20.6 1.0
N B:SER584 4.7 21.6 1.0
NE B:ARG542 4.8 22.2 1.0
O B:HOH1169 4.8 53.2 1.0
CE B:MET635 4.9 73.9 1.0
CA B:ARG542 4.9 16.2 1.0

Calcium binding site 6 out of 9 in 1p8x

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Calcium binding site 6 out of 9 in the The Calcium-Activated C-Terminal Half of Gelsolin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of The Calcium-Activated C-Terminal Half of Gelsolin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1003

b:28.9
occ:1.00
 O B:ASP669 2.4 24.4 1.0
OD2 B:ASP670 2.5 23.0 1.0
OE2 B:GLU692 2.5 24.5 1.0
O B:HOH1217 2.5 28.8 1.0
OE1 B:GLU692 2.5 27.2 1.0
O B:HOH1222 2.6 27.4 1.0
O B:HOH1223 2.7 38.9 1.0
CD B:GLU692 2.8 23.7 1.0
C B:ASP669 3.5 26.6 1.0
CG B:ASP670 3.6 27.2 1.0
CA B:ASP670 4.0 23.6 1.0
OG B:SER646 4.1 26.1 1.0
N B:ASP670 4.2 23.8 1.0
CB B:ASP669 4.3 32.3 1.0
ND2 B:ASN647 4.3 26.3 1.0
CB B:ASP670 4.3 23.5 1.0
CG B:GLU692 4.3 23.8 1.0
CA B:ASP669 4.5 27.0 1.0
OD1 B:ASP670 4.5 25.4 1.0
CA B:SER688 4.5 28.4 1.0
N B:GLN689 4.6 29.8 1.0
O B:HOH1224 4.7 34.3 1.0
N B:ASN647 4.7 23.8 1.0
CB B:SER646 4.8 25.4 1.0
O B:ASP687 4.8 31.1 1.0
O B:HOH1218 4.8 37.7 1.0
CA B:SER646 4.9 24.1 1.0
CG B:GLN689 4.9 37.1 1.0
N B:LYS648 5.0 28.8 1.0
CB B:SER688 5.0 24.2 1.0
NE2 B:GLN689 5.0 44.3 1.0

Calcium binding site 7 out of 9 in 1p8x

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Calcium binding site 7 out of 9 in the The Calcium-Activated C-Terminal Half of Gelsolin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of The Calcium-Activated C-Terminal Half of Gelsolin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1001

b:40.9
occ:1.00
 OD1 C:ASP445 2.3 29.7 1.0
OE1 C:GLU475 2.5 37.0 1.0
O C:THR524 2.7 46.6 1.0
O C:GLY444 2.7 32.2 1.0
OE2 C:GLU475 2.7 35.9 1.0
O C:HOH1119 2.7 63.0 1.0
O C:HOH1167 2.8 65.1 1.0
CD C:GLU475 3.0 37.0 1.0
C C:GLY444 3.4 31.2 1.0
CG C:ASP445 3.4 29.6 1.0
CA C:ASP445 3.7 29.4 1.0
C C:THR524 3.8 47.8 1.0
N C:ASP445 3.8 29.9 1.0
N C:THR524 3.9 43.1 1.0
O C:HOH1014 4.0 34.6 1.0
CB C:ASP445 4.1 28.4 1.0
OD2 C:ASP445 4.4 26.8 1.0
CA C:THR524 4.4 46.2 1.0
CG C:GLU475 4.5 34.9 1.0
CA C:GLY444 4.5 30.2 1.0
O C:HOH1329 4.6 44.0 1.0
CG2 C:THR524 4.7 45.8 1.0
C C:GLY523 4.7 42.3 1.0
N C:SER525 4.8 49.1 1.0
CB C:SER525 4.9 52.1 1.0
CA C:GLY523 4.9 39.6 1.0
C C:ASP445 4.9 28.8 1.0

Calcium binding site 8 out of 9 in 1p8x

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Calcium binding site 8 out of 9 in the The Calcium-Activated C-Terminal Half of Gelsolin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of The Calcium-Activated C-Terminal Half of Gelsolin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1002

b:27.0
occ:1.00
 OE2 C:GLU587 2.4 24.9 1.0
OD1 C:ASP565 2.4 21.4 1.0
O C:ASN564 2.5 23.3 1.0
O C:HOH1308 2.5 24.6 1.0
OD1 C:ASN564 2.5 28.1 1.0
O C:HOH1188 2.6 26.5 1.0
OE1 C:GLU587 2.8 26.4 1.0
CD C:GLU587 2.9 27.6 1.0
CG C:ASN564 3.3 26.3 1.0
C C:ASN564 3.3 23.6 1.0
CG C:ASP565 3.6 26.8 1.0
CA C:ASP565 3.9 22.6 1.0
N C:ASP565 4.0 24.7 1.0
ND2 C:ASN564 4.1 24.7 1.0
CB C:ASN564 4.1 24.1 1.0
CB C:ASP565 4.3 24.4 1.0
CA C:ASN564 4.3 23.9 1.0
CG C:GLU587 4.4 25.4 1.0
O C:GLY582 4.5 27.6 1.0
CG C:ARG542 4.5 26.4 1.0
OD2 C:ASP565 4.5 26.4 1.0
CA C:ALA583 4.7 28.8 1.0
N C:SER584 4.8 30.1 1.0
NE C:ARG542 4.8 25.2 1.0
O C:ALA543 4.8 26.9 1.0
N C:ALA543 4.9 23.7 1.0
CA C:ARG542 5.0 24.3 1.0

Calcium binding site 9 out of 9 in 1p8x

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Calcium binding site 9 out of 9 in the The Calcium-Activated C-Terminal Half of Gelsolin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of The Calcium-Activated C-Terminal Half of Gelsolin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1003

b:35.5
occ:1.00
 O C:ASP669 2.4 24.9 1.0
OD2 C:ASP670 2.5 27.2 1.0
OE2 C:GLU692 2.5 27.1 1.0
OE1 C:GLU692 2.6 26.4 1.0
O C:HOH1270 2.7 32.0 1.0
O C:HOH1269 2.7 30.4 1.0
O C:HOH1271 2.7 33.2 1.0
CD C:GLU692 2.9 27.3 1.0
C C:ASP669 3.5 26.8 1.0
CG C:ASP670 3.7 29.3 1.0
OG C:SER646 4.0 27.5 1.0
CA C:ASP670 4.0 26.0 1.0
N C:ASP670 4.3 25.4 1.0
CB C:ASP669 4.3 32.5 1.0
ND2 C:ASN647 4.4 28.0 1.0
CG C:GLU692 4.4 24.6 1.0
CB C:ASP670 4.4 27.4 1.0
CA C:SER688 4.5 27.5 1.0
CA C:ASP669 4.5 26.9 1.0
OD1 C:ASP670 4.6 32.3 1.0
N C:GLN689 4.6 30.6 1.0
CB C:SER646 4.7 25.4 1.0
O C:ASP687 4.7 28.6 1.0
O C:HOH1223 4.8 46.4 1.0
N C:ASN647 4.9 26.8 1.0
CG C:GLN689 4.9 41.5 1.0
NE2 C:GLN689 4.9 48.5 1.0
CA C:SER646 4.9 26.1 1.0
CB C:SER688 5.0 25.1 1.0

Reference:

K.Narayan, S.Chumnarnsilpa, H.Choe, E.Irobi, D.Urosev, U.Lindberg, C.E.Schutt, L.D.Burtnick, R.C.Robinson. Activation in Isolation: Exposure of the Actin-Binding Site in the C-Terminal Half of Gelsolin Does Not Require Actin Febs Lett. V. 552 82 2003.
ISSN: ISSN 0014-5793
PubMed: 14527664
DOI: 10.1016/S0014-5793(03)00933-5
Page generated: Sat Dec 12 03:13:39 2020

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