Calcium in PDB 1pvb: X-Ray Structure of A New Crystal Form of Pike 4.10 Parvalbumin

The structure of X-Ray Structure of A New Crystal Form of Pike 4.10 Parvalbumin, PDB code: 1pvb was solved by J.P.Declercq, B.Tinant, J.Parello, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 1.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.840, 49.950, 34.960, 90.00, 90.00, 90.00
R / Rfree (%)	16.8 / n/a

The binding sites of Calcium atom in the X-Ray Structure of A New Crystal Form of Pike 4.10 Parvalbumin (pdb code 1pvb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the X-Ray Structure of A New Crystal Form of Pike 4.10 Parvalbumin, PDB code: 1pvb:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the X-Ray Structure of A New Crystal Form of Pike 4.10 Parvalbumin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of A New Crystal Form of Pike 4.10 Parvalbumin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca110 b:5.3 occ:1.00 O A:PHE57 2.3 5.2 1.0 OG A:SER55 2.4 3.1 1.0 OD1 A:ASP51 2.4 2.5 1.0 OE1 A:GLU59 2.4 3.5 1.0 OD1 A:ASP53 2.4 6.3 1.0 OE1 A:GLU62 2.5 3.1 1.0 OE2 A:GLU62 2.6 4.2 1.0 CD A:GLU62 2.9 3.3 1.0 CD A:GLU59 3.3 4.0 1.0 CG A:ASP53 3.4 6.8 1.0 CB A:SER55 3.5 5.1 1.0 CG A:ASP51 3.5 3.2 1.0 OE2 A:GLU59 3.5 5.0 1.0 C A:PHE57 3.6 4.8 1.0 OD2 A:ASP53 3.8 8.0 1.0 N A:SER55 3.9 6.5 1.0 N A:NH4200 4.1 11.5 1.0 CA A:SER55 4.3 6.2 1.0 CA A:ASP51 4.3 4.1 1.0 CA A:ILE58 4.3 3.5 1.0 N A:GLU59 4.3 3.9 1.0 OD2 A:ASP51 4.3 4.4 1.0 N A:ASP53 4.3 6.0 1.0 CG A:GLU62 4.3 4.1 1.0 N A:PHE57 4.4 4.8 1.0 N A:ILE58 4.4 3.4 1.0 CB A:ASP51 4.4 3.5 1.0 C A:ASP51 4.5 4.2 1.0 CA A:PHE57 4.6 4.8 1.0 N A:LYS54 4.6 7.0 1.0 CB A:ASP53 4.6 5.6 1.0 N A:GLN52 4.6 5.1 1.0 CG A:GLU59 4.7 4.3 1.0 N A:GLY56 4.8 5.3 1.0 C A:ILE58 4.8 3.5 1.0 CA A:ASP53 4.8 7.0 1.0 C A:ASP53 4.8 7.3 1.0 C A:SER55 4.8 6.0 1.0 O A:HOH216 4.9 11.1 1.0 O A:ASP51 4.9 4.1 1.0

Calcium binding site 2 out of 2 in the X-Ray Structure of A New Crystal Form of Pike 4.10 Parvalbumin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of X-Ray Structure of A New Crystal Form of Pike 4.10 Parvalbumin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca111 b:4.4 occ:1.00 O A:MET96 2.3 7.5 1.0 O A:HOH201 2.4 10.0 1.0 OD1 A:ASP90 2.4 3.3 1.0 OD1 A:ASP92 2.4 9.6 1.0 OD1 A:ASP94 2.4 7.0 1.0 OE1 A:GLU101 2.4 6.8 1.0 OE2 A:GLU101 2.6 6.1 1.0 CD A:GLU101 2.8 5.8 1.0 CG A:ASP94 3.3 9.1 1.0 CG A:ASP92 3.3 11.9 1.0 C A:MET96 3.5 6.5 1.0 CG A:ASP90 3.5 4.8 1.0 OD2 A:ASP94 3.6 8.0 1.0 OD2 A:ASP92 3.7 13.2 1.0 CA A:ASP90 4.2 7.7 1.0 N A:ASP94 4.2 9.1 1.0 N A:MET96 4.2 6.8 1.0 CA A:ILE97 4.3 4.9 1.0 N A:ASP92 4.3 10.3 1.0 CG A:GLU101 4.3 5.2 1.0 N A:ILE97 4.3 5.2 1.0 OD2 A:ASP90 4.3 5.3 1.0 CB A:ASP90 4.3 6.3 1.0 N A:GLY98 4.4 4.4 1.0 CA A:MET96 4.4 7.2 1.0 CB A:ASP94 4.5 8.5 1.0 C A:ASP90 4.6 8.7 1.0 CB A:ASP92 4.6 10.8 1.0 N A:GLY93 4.6 9.9 1.0 N A:LYS91 4.7 9.7 1.0 CA A:ASP94 4.8 9.1 1.0 CA A:ASP92 4.8 10.5 1.0 C A:ILE97 4.8 4.7 1.0 C A:ASP92 4.9 10.5 1.0 N A:GLY95 4.9 7.8 1.0 CB A:MET96 4.9 9.1 1.0

J.P.Declercq, B.Tinant, J.Parello. X-Ray Structure of A New Crystal Form of Pike 4.10 Beta Parvalbumin. Acta Crystallogr.,Sect.D V. 52 165 1996.
ISSN: ISSN 0907-4449
PubMed: 15299738
DOI: 10.1107/S0907444995010006